Table 3.
Hypothesis testing results using the chosen mean functional form for each PDX model and sp(pow) covariance structure for all PDX models.
| PDX | Comparison | P values | Conclusion | ||||
|---|---|---|---|---|---|---|---|
| Coincident curves (2df) | Intercept (AUC) | Slope | Quad | ||||
| PH80 | Diluent | MK | 0.0590 | 0.0491 | 0.1299 | Marginal activity | |
| Chemo | < 0.0001 | < 0.0001 | < 0.0001 | Shows activity | |||
| Chemo + MK | < 0.0001 | < 0.0001 | < 0.0001 | Shows activity | |||
| Chemo | Chemo + MK | 0.2715 | 0.9441 | 0.1038 | Not better than chemo | ||
| PH87 | Diluent | MK | 0.0989 | 0.2042 | 0.0757 | Marginal activity | |
| Chemo | < 0.0001 | 0.0164 | < 0.0001 | Shows activity | |||
| Chemo + MK | < 0.0001 | 0.0747 | < 0.0001 | Shows activity | |||
| Chemo | Chemo + MK | 0.7616 | 0.5204 | 0.5437 | Not better than chemo | ||
| PH77 | Diluent | MK | < 0.0001 | 0.0023 | < 0.0001 | Shows activity | |
| Chemo | < 0.0001 | < 0.0001 | < 0.0001 | Shows activity | |||
| Chemo + MK | < 0.0001 | < 0.0001 | < 0.0001 | Shows activity | |||
| Chemo | Chemo + MK | 0.7587 | 0.9648 | 0.4575 | Not better than chemo | ||
| PH95 | Diluent | MK | 0.9972 | 0.9865 | 0.9420 | No activity | |
| Chemo | 0.0007 | 0.0139 | 0.0008 | Shows activity | |||
| Chemo + MK | 0.0001 | 0.0068 | 0.0002 | Shows activity | |||
| Chemo | Chemo + MK | 0.9377 | 0.7845 | 0.7914 | Not better than chemo | ||
| PH39 | Diluent | MK | < 0.0001 | 0.0005 | 0.0030 | 0.8080 | Shows activity |
| Chemo | < 0.0001 | < 0.0001 | 0.0021 | 0.9792 | Shows activity | ||
| Chemo + MK | < 0.0001 | < 0.0001 | 0.0006 | 0.3725 | Shows activity | ||
| Chemo | Chemo + MK | 0.0290 | 0.0090 | 0.2309 | 0.0255 | Improvement above chemo in mean, not growth rate | |
Comparisons of Chemo versus Chemo + MK assess the primary question of the study, i.e., whether addition of the PARPi MK to chemo improves the performance. Comparisons with diluent assess the secondary question of whether each arm shows activity. The test of coincident curves used 2 degrees of freedom for PH80, PH87, PH77, PH95, and 3 degrees of freedom for PH39.
PDX Patient derived xenograft, Sp(pow) Spatial(power), Chemo Chemotherapy, MK MK-4827, PARPi Polymerase inhibitor, AUC Area under the curve.