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. 2019 Nov 19;20:244. doi: 10.1186/s13059-019-1835-8

Table 3.

Baseline methods in term-centric evaluation of protein function prediction

Model number Training data Score assignment
Expression 1 Gene expression compendium for P. aeruginosa PAO1 Highest correlation score out of all pairwise correlations
2 Top 10 average correlation score
BLAST 1 All experimental annotation in UniProt-GOA. Sequences from Swiss-Prot Highest sequence identity out of all pairwise BLASTp hits
2 All experimental annotation in UniProt-GOA. Sequences from Swiss-Prot and TrEMBL
blastcomp 1 All experimental and computational annotations in UniProt-GOA. Sequences from Swiss-Prot
2 All experimental and computational annotations in UniProt-GOA. Sequences from Swiss-Prot and TrEMBL