Figure 3.
(A) and (B) The contact-map and structures (superposing the first “Zhang-Server” model (blue) with the experimental structure (red), superposing the first LOMETS template (yellow) with the experimental structure (red), and superposing the first I-TASSER model (cyan) with the experimental structure (red)) for target T0973-D1. The bad terminal contacts and the corresponding wrong structural model are highlighted with the black box. The red, blue and grey points on the contact-map correspond to the contacts predicted by NeBcon, extracted from the “Zhang-Server” model, or extracted from the experimental structure, respectively. (C) The homo-oligomeric T0973-D1 complex which was constructed using 2vf9 as a reference. The center copy of T0973-D1 is shown in green and inter-chain contacts are shown by the blue sticks. (D) The contact-map which maps inter-chain contacts to one monomer contact map. The terminal contacts and the corresponding inter-chain contacts are highlighted with the black box. The red, blue and grey points on the contact-map correspond to the contacts predicted by NeBcon, mapped from the inter-chain contacts, or extracted from the experimental structure, respectively.