Table 8.
Random forest decision tree classifications of HD+ using genes from (1)
| (a) Trees built with top 250 DE genes from (1) | ||
| Top | HD BA9 | Control BA9 |
| HD+ BA9 | 0.354 | 0.646 |
| HD+ CAU | 1 | 0 |
| (b) Trees built with 250 random genes from (1) | ||
| Random | HD BA9 | Control BA9 |
| HD+ BA9 | 0.318 | 0.682 |
| HD+ CAU | 0.940 | 0.060 |
| (c) Trees built with 250 random genes from (1) and shuffled labels | ||
| Null | HD BA9 | Control BA9 |
| HD+ BA9 | 0.485 | 0.515 |
| HD+ CAU | 0.464 | 0.536 |
All figures are the fraction of 20,000 trees that predicted each sample to have the corresponding label indicated in the column. E.g. 49.5% of the trees predicted HD+ BA9 samples to be HD BA9