Table 2.
Experiments performed for comparing BERMUDA with existing methods
| Dataset | Batch | Experiment name | Cell type removed |
|---|---|---|---|
| 2D Gaussian | Batch1, Batch2 | Experiment all | NA |
| Experiment removal1 | Type1 from Batch1 | ||
| Experiment removal2 |
Type1 from Batch1, Type4 from Batch2 |
||
| Splatter | Batch1, Batch2 | Experiment all | NA |
| Experiment removal1 | Type1 from Batch1 | ||
| Experiment removal2 |
Type1 from Batch1, Type4 from Batch2 |
||
| Pancreas | Muraro batch, Baron batch | Experiment all | NA |
| Experiment removal | alpha and beta from Baron batch | ||
|
Muraro batch, Baron batch, Segerstolpe batch |
Experiment all | NA | |
| Experiment removal |
alpha and beta from Baron batch, alpha and beta from Segerstolpe batch |
||
| PBMC |
PBMC batch, pan T cell batch |
NA | NA |