Table 1.
Organisation of the mitochondrial genome of Melarhaphe neritoides and comparison with Littorina fabalis, Littorina obtusata and Littorina saxatilis25.
| Gene | Strand | Location | Start codon | Stop codon | Length (bp) | Intergenic nucleotides* | Amino acid changes** |
|---|---|---|---|---|---|---|---|
| cox1 | + | 1–1536 | ATG | TAA | 1536 | 11 30 | 10/511 (2%) |
| cox2 | + | 1548–2234 | ATG | TAA | 687 | 5 2 | 11/228 (5%) |
| trnD(gtc) | + | 2240–2307 | 68 69 | 1 | |||
| atp8 | + | 2309–2467 | ATG | TAA TAG | 159 | 2 13 | 12/52 (23%) |
| atp6 | + | 2470–3165 | ATT ATG | TAA TAG | 696 | 38 31 | 35/231 (15%) |
| trnM(cat) | — | 3204–3271 | 68 | 1 | |||
| trnY(gta) | — | 3273–3340 | 68 | 1 11 | |||
| trnC(gca) | — | 3342–3407 | 66 65 | 1 | |||
| trnW(tca) | — | 3409–3474 | 66 | 2 1 | |||
| trnQ(ttg) | — | 3477–3533 | 57 58 | 7 11 | |||
| trnG(tcc) | — | 3541–3607 | 67 | 0 −1 | |||
| trnE(ttc) | — | 3608–3672 | 65 71 | 78 72 | |||
| rrnS | + | 3751–4632 | 882 894a,b 895c | −3 | |||
| trnV(tac) | + | 4630–4696 | 67 68 | −23 −22 | |||
| rrnL | + | 4674–6087 | 1414 1415 | −36 −10 | |||
| trnL2(taa) | + | 6052–6121 | 70 67 | 2 8 | |||
| trnL1(tag) | + | 6124–6191 | 68 67 | 0 | |||
| nad1 | + | 6192–7133 | ATG | TAG TAA | 942 939 | 0 7 | 42/313 (13%) |
| trnP(tgg) | + | 7134–7200 | 67 68 | 1 2 | |||
| nad6 | + | 7202–7705 | ATG | TAA TAG | 504 513 | 8 9 | 61/167 (37%) |
| cob | + | 7714–8853 | ATG | TAG TAA | 1140 | 9 18a,b 17c | 38/379 (10%) |
| trnS2(tga) | + | 8863–8929 | 67 68 | 0 5 | |||
| trnT(tgt) | — | 8930–8999 | 70 71a | 8 | |||
| nad4l | + | 9008–9304 | ATG | TAA TAG | 297 | −7 | 14/98 (14%) |
| nad4 | + | 9298–10668 | ATG | TAA TAGc | 1371 | 0 8a 9b,c | 108/456 (24%) |
| trnH(gtg) | + | 10669–10732 | 64 66 | 0 1 | |||
| nad5 | + | 10733–12454 | ATG | TAA | 1722 1719 | −1 21a,b 23c | 129/573 (23%) |
| trnF(gaa) | + | 12454–12520 | 67 69 | 0 | |||
| CR (partial) | 12521–12994 | 474 | 0 | ||||
| cox3 | + | 12995–13774 | ATG | TAA | 780 | 32 33 | 19/259 (7%) |
| trnK(ttt) | + | 13807–13878 | 72 73 | 11 6a 5b | |||
| trnA(tgc) | + | 13890–13957 | 68 67 | 1 | |||
| trnR(tcg) | + | 13959–14027 | 69 | 10 5 | |||
| trnN(gtt) | + | 14038–14104 | 67 | 15 13a,c 14b | |||
| trnI(gat) | + | 14120–14186 | 67 69 | 3 4 | |||
| nad3 | + | 14190–14543 | ATG | TAA | 354 | 0 −1 | 22/117 (19%) |
| trnS1(gct) | + | 14544–14611 | 68 67 | 0 | |||
| nad2 | + | 14612–15673 | ATG | TAG TAA | 1062 1059 | 3 5 | 112/353 (32%) |
Differences between M. neritoides and aLittorina fabalis, bLittorina obtusata and cLittorina saxatilis are in bold. *Numbers of intergenic nucleotides separating a gene from the next one; negative values represent overlapping nucleotides in adjacent genes. **Number (and corresponding percentage) of residues in the amino acid sequence of Melarhaphe neritoides that differ with any of the three other species.