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. 2017 Nov 25;8(65):109436–109456. doi: 10.18632/oncotarget.22689

Table 3. The genetic panel for deep learning classification adapted from consistently upregulated and downregulated genes.

Number of gene Gene symbols
Upregulated genes 113 FOXM1, RFC4, ORC6, NCAPG2, KIF23, TRIP13, CENPN, KIF14, TYMS, AARS, DONSON, E2F3, RNPS1, BRIX1, TMEM194A, MELK, MCM3, MOCOS, BUB1, ECT2, CDC25B, DEPDC1, FBXO5, POLR2H, RAD1, CDK1, RAD54L, BUB3, SUPV3L1, DBF4, NETO2, CENPI, SLC7A6, CMC2, MEST, BLM, ZNF281, ACOT9, MAD2L1, DDX11, PDIA5, ELAVL1, NUP155, RUVBL1, WARS, SS18L1, MTHFD2, LRRC8D, MSH6, IMMT, LHX2, RAD21, EIF2S2, MDC1, NUP85, C5orf22, CDC23, UCK2, PTDSS1, UBA2, ZNF473, BRCA1, TMEM22, ADAR, NUP160, ACP1, WBP11, DIEXF, C9orf91, NVL, PTPLAD1, C3orf37, WASF1, HPRT1, ACTL6A, PPAT, DKC1, POGK, MTFR1, ELF4, HAUS6, TEX10, USP18, PRKCI, TNPO1, ARL6IP1, KIAA1598, NFATC2IP, KIAA0947, PARP12, NUCKS1, PARPBP, TAF5, CRKL, GOLT1B, CEP152, SLC25A17, HSP90AA1, HERC5, NSL1, FN3KRP, IFI30, LSG1, PALB2, MTMR4, PSMA6, SFMBT1, TTC13, DAP3, TRIM45, OSBPL11, COG2, NOL11
Downregulated genes 55 SYNGR1, CFD, C9orf125, TTC39A, BBOX1, CXCR2, CRYL1, HPGD, HEBP2, MAL, FHIT, EDN3, NDST2, ABR, UPK1A, SOSTDC1, ITPR2, CAB39L, ALOX12, FUT6, TP53AIP1, CD24, MREG, FGFR2, PLD2, EPHB6, ACAA1, CWH43, CA12, ZNF91, IL17RC, TBX3, RAPGEF3, PACRG, ECHDC2, ZC4H2, ASAP3, EPS8L1, ZNF426, ALDH2, C5orf4, MAPK10, SLC24A3, GYS2, PPP1R3C, PADI1, DEFB4A, RGS12, ENDOD1, GULP1, TMEM8B, PGAP3, TRIM13, CLN8, PLBD1