Table 2.
Online circRNA databases
| Name | Description | Website | Reference |
|---|---|---|---|
| circBase | A comprehensive database for public circRNA datasets | http://www.circbase.org | [112] |
| CircInteractome | proteins or miRNAs, as well as primer design and siRNA design | http://circinteractome.nia.nih.gov | [113] |
| Circnet | A database of circular RNAs derived from transcriptome sequencing data | http://circnet.mbc.nctu.edu.tw/ | [114] |
| circ2Traits | A knowledgebase of human circRNAs associated with diseases or traits | http://gyanxet-beta.com/circdb/ | [115] |
| deepBase v2.0 | A database of small RNAs, long non-coding RNAs and circular RNAs from deep sequencing | http://rna.sysu.edu.cn/deepBase/ | [116] |
| starBase v2.0 | circRNA database for miRNA-circRNA interactions | http://starbase.sysu.edu.cn/ | [117] |
| CIRCpedia | Annotating alternative back-splicing and alternative splicing in circRNAs | http://www.picb.ac.cn/rnomics/circpedia | [21] |
| circRNADb | A comprehensive database for human circular RNAs with protein-coding annotations. | http://reprod.njmu.edu.cn/circrnadb | [118] |
| TSCD | A database of tissue-specific circular RNAs in the human and mouse genomes | http://gb.whu.edu.cn/TSCD | [31] |