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. 2017 Apr 15;8(26):42438–42454. doi: 10.18632/oncotarget.17124

Figure 6. Mutually exclusive binding of VPC-18005 and DNA with the ERG-ETS domain.

Figure 6

The position of the carboxyl group in VPC-18005 (orange = carbon, blue = nitrogen, red = oxygen, yellow = sulfur) is predicted to coincide with that of a phosphate group on the DNA backbone (cyan ribbons and sticks). Thus, binding of VPC-18005 or DNA with the ERG-ETS domain is expected to be mutually exclusive. Whereas the lower portion of the VPC-18005 chemical structure occupies the same general area as the DNA, the upper portion, consisted of the isopropyl moiety and aromatic ring, extends further into the pocket (shown in grey net). The ERG-ETS protein structure is rotated −90 degree on the vertical axis, compared to those shown in Figure 2.