Skip to main content
. 2017 Jun 15;6:e25555. doi: 10.7554/eLife.25555

Figure 1. RTN3 over-expression induces ER tubules fragmentation during starvation.

(A, B) Schematic representation of the protein structure and topology of FAM134B (A) and RTN3 long and short isoforms (B). (C) Immunofluorescence of HA and LC3B in U2OS TRex stable cell lines expressing FLAG-HA-RTN3L after 24 hr treatment with 1 µg/ml of doxycycline. Cells were kept in standard growing condition (DMEM with 10% FBS) or starved with EBSS for 6 hr. RTN3L was monitored using anti HA antibody, while autophagy induction was visualized using anti-LC3B antibody. Bafilomycin A1 was added at a final concentration of 200 ng/ml. Scale bars: 10 µm. (D) Quantification of U2OS TRex FLAG-HA-RTN1-4L cells with ER tubule fragment after 6 hr starvation with EBSS plus Bafilomycin A1, 200 ng/ml. Number of cells >100 for each condition. Data are representative of three independent biological replicates. Error bars indicate s.d. (E) Super-resolution fluorescence microscopy (dSTORM) of ER fragments in U2OS TRex FLAG-HA-RTN3L cells stained with anti HA and anti LC3B antibodies after 6 hr starvation with EBSS plus Bafilomycin A1, 200 ng/ml. Scale bar: 0.5 µm. (F) Schematic representation of ER tubules fragmentation and LC3 labeling in U2OS TRex FLAG-HA-RTN3L cells. The red square indicates the level of high resolution represented in panel E.

DOI: http://dx.doi.org/10.7554/eLife.25555.002

Figure 1.

Figure 1—figure supplement 1. Reticulon family members.

Figure 1—figure supplement 1.

(A) Schematic representation of RTN1-4 genes and relative isoforms. Red asterisks (*) indicate the presence of mutations inside the RHD of RTN3. (B) RTNs short and long isoforms nomenclature as indicated in PubMed (Gene) and Ref-Seqs. For simplicity, the long isoforms are indicated as RTN#L the short isoform as RTN#S. (C) Schematic representation for the U2OS TRex FLAG-HA-RTNs stable and inducible cell lines.
Figure 1—figure supplement 2. ER tubules morphology in U2OS TRex cells after over-expression of full length RTN proteins.

Figure 1—figure supplement 2.

(A) Endogenous labeling of CALNEXIN and REEP5 in U2OS TRex cells. (B) Endogenous labeling of CALNEXIN and REEP5 in U2OS TRex cells after over-expression of long RTN isoforms. Scale bars: 10 µm.
Figure 1—figure supplement 3. ER tubules morphology in U2OS TRex cell after over-expression of short RTN variants.

Figure 1—figure supplement 3.

(A) Endogenous labeling of CALNEXIN and REEP5 in U2OS TRex cells. (B) Endogenous labeling of CALNEXIN and REEP5 in U2OS TRex cells after over-expression of short RTN isoforms. Scale bars: 10 µm.
Figure 1—figure supplement 4. ER tubules morphology in U2OS TRex RTNs cell lines after autophagy induction via EBSS starvation.

Figure 1—figure supplement 4.

(A) Immunofluorescence of HA and LC3B in U2OS TRex RTN1-4L (B) and RTN1-4S after 24 hr treatment with 1 µg/ml of doxycycline. Cells were kept in standard growing condition (DMEM with 10% FBS) or starved with EBSS for the indicated time. RTNs were monitored using anti-HA antibody, while autophagy induction was visualized using anti-LC3B antibody. Bafilomycin A1 was added at a final concentration of 200 ng/ml. Scale bars: 10 µm.
Figure 1—figure supplement 5. RTN3L over-expression promotes ER tubules fragmentation during autophagy induction.

Figure 1—figure supplement 5.

(A) Super-resolution fluorescence microscopy (dSTORM) of ER fragments in U2OS TRex FLAG-HA-RTN3L cells stained with anti HA and anti LC3B antibodies after 6 hr starvation with EBSS plus Bafilomycin A1, 200 ng/ml. Scale bar: 5 µm. The white box indicates the magnification reported in Figure 1E. (B) Co-localization of endogenous RTN3 with SEC63, in U2OS cells over-expressing GFP-SEC63, in standard growing conditions and after EBSS treatment for 6 hr. (C) Co-staining of endogenous RTN3 and LC3B in U2OS cells in standard growing conditions (DMEM with 10% FBS) and after nutrient deprivation (EBSS). (D) Co-staining of HA and CALNEXIN, BSCL2, REEP5 and CLIMP-63 in U2OS TRex FLAG-HA-RTN3L cells in standard growing conditions and after EBSS starvation. Scale bars: 10 µm.