Fig. 3.
Comparison of initial and final alignments to the target structure. (a) Scatter plot of RMSD from native of the final models built by tasser refinements versus RMSD from native of the initial template alignments identified by sal. The same aligned regions are used in both RMSD calculations. (b) Similar data as in a, but the models are from modeller refinements. (c) Fraction of targets with an RMSD improvement “d” by tasser greater than some threshold value. Here d = (RMSD of template) – (RMSD of final model), where both RMSDs are calculated over aligned regions. Each point in c is calculated with a bin width of 1 Å. (d) Similar data as in c, but the models are from modeller.