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. Author manuscript; available in PMC: 2017 Aug 1.
Published in final edited form as: Nat Rev Genet. 2016 Nov 14;18(2):117–127. doi: 10.1038/nrg.2016.142

Table 1. Publicly available summary association statistics.

We provide a partial list of publicly available summary statistics from GWAS with sample size at least 20,000. A more complete list is provided in ref.119.

Trait N Reference URL
Age at menarche 127,884 Perry et al. 2014 Nature http://www.reprogen.org/
Alzheimer’s 54,162 Lambert et al. 2013 Nat Genet http://www.pasteur-lille.fr/en/recherche/u744/igap/igap_download.php
Bone mineral density 53,236 Zheng et al Nat Genet 2015 http://www.gefos.org/?q=content/data-release-2015
BMI 122,033 Speliotes et al. 2010 Nat Genet http://www.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium_data_files
BMI* 322,154 Locke et al. 2015 Nature http://www.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium_data_files
Coronary artery disease 77,210 Schunkert et al. 2011 Nat Genet http://www.cardiogramplusc4d.org/
Crohn’s disease 20,883 Jostins et al. 2012 Nature http://www.ibdgenetics.org/downloads.html
Crohn’s disease* 51,874 Liu et al. 2015 Nat Genet http://www.ibdgenetics.org/downloads.html
Depressive symptoms 161,460 Okbay et al. 2016 Nat Genet http://ssgac.org/documents/
Ever smoked 74,035 Furberg et al. 2010 Nat Genet http://www.med.unc.edu/pgc/downloads/
Fasting glucose 58,074 Manning et al. 2012 Nat Genet http://www.magicinvestigators.org/downloads/
HbA1C 46,368 Soranzo et al. 2010 Diabetes http://www.magicinvestigators.org/downloads/
HDL 97,749 Teslovich et al. 2010 Nature http://www.broadinstitute.org/mpg/pubs/lipids2010/
HDL* 188,577 Willer et al. 2013 NG http://csg.sph.umich.edu//abecasis/public/lipids2013/
Height 131,547 Lango Allen et al. 2010 Nature http://www.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium_data_files
Height* 253,288 Wood et al. 2014 Nat Genet http://www.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium_data_files
Hip Circumference 213,038 Shungin et al Nat Genet 2015 http://portals.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium_data_files
IBD (Crohn’s/UC) 34,652 Jostins et al. 2012 Nature http://www.ibdgenetics.org/downloads.html
IBD* (Crohn’s/UC) 65,643 Liu et al. 2015 Nat Genet http://www.ibdgenetics.org/downloads.html
LDL 93,354 Teslovich et al. 2010 Nature http://www.broadinstitute.org/mpg/pubs/lipids2010/
LDL* 188,577 Willer et al. 2013 NG http://csg.sph.umich.edu//abecasis/public/lipids2013/
Neuroticism 170,911 Okbay et al. 2016 Nat Genet http://ssgac.org/documents/
RA (Europeans) 38,242 Okada et al. 2014 Nature http://plaza.umin.ac.jp/yokada/datasource/software.html
RA* (Europeans) 58,284 Okada et al. 2014 Nature http://plaza.umin.ac.jp/yokada/datasource/software.html
RA (East Asians) 22,515 Okada et al. 2014 Nature http://plaza.umin.ac.jp/yokada/datasource/software.html
Schizophrenia 70,100 Ripke et al. 2014 Nature http://www.med.unc.edu/pgc/downloads/
Subjective well-being 298,420 Okbay et al. 2016 Nat Genet http://ssgac.org/documents/
Triglycerides 94,461 Teslovich et al. 2010 Nature http://www.broadinstitute.org/mpg/pubs/lipids2010/
Triglycerides* 188,577 Willer et al. 2013 NG http://csg.sph.umich.edu//abecasis/public/lipids2013/
Type 2 diabetes 60,786 Morris et al. 2012 Nat Genet http://www.diagram-consortium.org/
Ulcerative colitis 27,432 Jostins et al. 2012 Nature http://www.ibdgenetics.org/downloads.html
Ulcerative colitis* 47,746 Liu et al. 2015 Nat Genet http://www.ibdgenetics.org/downloads.html
Waist Circumference 232,101 Shungin et al Nat Genet 2015 http://portals.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium_data_files
Waist Hip Ratio 212,248 Shungin et al Nat Genet 2015 http://portals.broadinstitute.org/collaboration/giant/index.php/GIANT_consortium_data_files
Years of education 328,917 Okbay et al. 2016 Nature http://ssgac.org/documents/
*

: includes specialty chip data; not suitable for analysis using LD score regression and its extensions.