Table 3. Resources judged to be ready for inclusion in ELIXIR at the end of the assessment process.
Resources are classified by strategic themes within ELIXIR-UK.
| Name | Strategic theme | URL |
|---|---|---|
| Ensembl – farmed and domesticated
animals 3 |
Agri-food data | www.ensembl.org |
| Pathogen Host Interactions Database
(PHI-base) 4 |
Agri-food data | http://www.phi-base.org |
| Biomedical Atlas Centre | Gene expression
atlases |
http://emouseatlas.org/,
http://hudsen.org/, http://echickatlas.org/ |
| IUPHAR/BPS Guide to Pharmacology 5 | Human health
& disease data |
www.guidetopharmacology.org |
| BioSharing 6 | Interoperability
services |
https://biosharing.org |
| InterMine 7 | Interoperability
services |
http://www.intermine.org,
https://github.com/intermine/intermine |
| ISA Tools & Commons 8 | Interoperability
services |
http://www.isa-tools.org
http://www.isacommons.org |
| CATH-Gene3D 9 | Protein structure &
function |
http://www.cathdb.info/ |
| Jalview and the Dundee Resource
for Sequence Analysis and Structure Prediction 10 |
Protein structure &
function |
http://www.jalview.org
www.compbio.dundee.ac.uk/jpred |
| Phyre2 11 | Protein structure &
function |
www.imperial.ac.uk/phyre2 |
| Birmingham Metabolomics Training
Centre |
Training |
http://www.birmingham.ac.uk/facilities/metabolomics-training-centre/
index.aspx |
| Cambridge Bioinformatics Training
Programme |
Training |
http://bioinfotraining.bio.cam.ac.uk/
http://training.csx.cam.ac.uk/bioinformatics/Event-timetable |
| Edinburgh Genomics Advanced
Training in Bioinformatics |
Training | https://genomics.ed.ac.uk/services/training |
| TeSS (Training e-Support System) | Training | https://tess.elixir-uk.org/ |
*References for the databases/tools have been added where available.