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. 2004 Oct 21;101(44):15724–15729. doi: 10.1073/pnas.0404089101

Table 4. Examples of known Category III genes related to cell growth revealed by large-scale cDNA transfection.

Description Unigenes Clones Examples
Genes related to environment, nutrition, and redox 418 884 General (SOD1). Nutrition response and metabolism-related [hexokinase 1; high-glucose-regulated protein 8 (HGRG8); fatty acid desaturase 1, 2, 3 (FADS1, FADS2, FADS3); phosphoglycerate kinase 1 (PGK1); hydroxysteroid (11-β) dehydrogenase 2 (HSD11B2); cytochrome P450 family (2, 3, 4, 11, 17, 19, 20, 21); S-adenosylhomocysteine hydrolase (AHCY); methylenetetrahydrofolate dehydrogenase (MTHFD1); AK2, AK3; adenosine deaminase (ADAR); cytoskeleton-related vitamin A responsive protein (JWA)]. Hormone regulation [corticotropin-releasing hormone (CRH); glucocorticoid modulatory element binding protein 1 (GMEB1); Adrenomedullin (ADM); prolactin regulatory element-binding protein (PREB); cytosolic thyroid hormone-binding protein (pyruvate kinase, muscle); gastrin-binding protein (HADHA, HADHB)]. ATP synthesis and ATPase (ATP5A1; ATP5B; ATP5F1; ATP5G2). Oxidation and electron transfer [flavoprotein (ETFB); flavoprotein dehydrogenase (ETFDH); NADH dehydrogenase (NDUFV1); P450 cytochrome oxidoreductase]. Glutathione-related [glutathione S-transferase (GST) A2, π; glutathione synthetase; glutathione peroxidase 1, 3, 4; γ-glutamyltransferase-like activity 1 (GGTLA1); glyceronephosphate O-acyltransferase (GNPAT)]
Immune response related 101 265 Cytokine/chemokines [interferon γ; interferon β 2 (IL6); chemokine (C-X3-C motif) ligand 1; chemokine (C-X-C motif) ligand 2; thymosin β 10]. Cytokine/chemokine receptors (CSF2RB; CSF3R). Interleukin receptors (IL1RL1; IL2RB; IL4R; IL10RA; IL17R). Cytokine-induced or regulatory proteins [interferon γ inducible protein 30 (IFI30); interferon-induced tetratricopeptide IFI60 (IFIT4); interferon-induced cellular resistance mediator M×A (MX 1)]. Antigen-related proteins [B cell receptor-associated protein 31 (BCAP31); antigen NY-CO-43 (PRKWNK2); CD4; CD44; hepatocellular carcinoma-associated antigen 59,66; squamous cell carcinoma antigen (SART1, 3); MAGED 1, 2, 4; melanoma 1 antigen (CD63); melanoma-associated gene (D2S448)]. Immune response modulatory proteins [Defensin α 1; decay accelerating factor (DAF); NK cell activating factor (PRG2)]
Ion channels, transporters, and exchangers 111 222 Ion channels [chloride channel 7 (CLCN7); sodium channel (SCN5A); potassium channel (KCNK3); calcium channel β 3 subunit (CACNB3); vacuolar H+ATPase subunit V0 (ATP6V0D1)]. Transporters and related proteins [anion exchanger (SLC4A1); potassium/chloride transporters (SLC12A4); sodium/hydrogen exchanger regulator factor 1, 2 (SLC9A3R1, SLC9A3R2); organic cation transporter (SLC22A1L, SLC22A1); amino acid transporter 4, 7 (SLC7A4, SLC7A7); facilitated glucose transporter (SLC2A8)]
Other proteins related to systemic regulation 20 30 PER1; Timeless Clock; NMDA R 2C (GRIN2C); GABARAP; GABARAPL; nicotinic acetylcholine R (CHRNB4); folate R 2 (FOLR2); opioid growth factor receptor (OGFR); ciliary neurotrophic factor receptor (CNTFR); GDNF family receptor α 1, 2 (GFRA 1, 2); sphingolipid G-protein-coupled receptor 5 (EDG5)

All categories and subgroups were classified according to gene function described in literature and information from Gene Ontology. For Tables 2, 3, 4, 5, the total number of unigenes is 2,836, and the total number of clones is 6,958.