Table 3. Transcript reads across different RNA sequencing experiments with whole eye tissue from 1-month-old B6 and Rho−/− mice and the retina and cultured primary RPE cells from B6 micea.
| Genes | Whole eye from B6 mice |
Retina from B6 mice | Whole eye from Rho−/− mice |
RPE cells from B6 mice |
|---|---|---|---|---|
|
| ||||
| Retinol dehydrogenases | ||||
|
| ||||
| Rdh5 | 177.38 | 122.91 | 166.30 | 32.47 |
|
| ||||
| Rdh8 | 67.4 | 46.78 | 7.54 | 0.18 |
|
| ||||
| Rdh10 | 76.79 | 52.17 | 38.52 | 8.29 |
|
| ||||
| Rdh11 | 19.27 | 20.52 | 11.07 | 27.14 |
|
| ||||
| Rdh12 | 195.4 | 131.39 | 13.57 | 0.73 |
|
| ||||
| Rdh13 | 8.79 | 8.14 | 6.50 | 8.41 |
|
| ||||
| Rdh14 | 21.09 | 19.62 | 17.93 | 7.88 |
|
| ||||
| Dhrs3 | 104.7 | 41.73 | 34.11 | 8.28 |
|
| ||||
| Retinol-binding proteins | ||||
|
| ||||
| Rbp4 | 2.05 | 0.53 | 0.90 | 1.57 |
|
| ||||
| Rlbp1 | 354.00 | 226.98 | 137.88 | 36.86 |
|
| ||||
| Rbp1 | 90.74 | 12.36 | 103.43 | 26.73 |
|
| ||||
| Rbp2 | 6.20 | 0.08 | 122.79 | 0.00 |
|
| ||||
| Rbp3 | 654.90 | 1093.27 | 174.28 | 0.05 |
|
| ||||
| Control genes from the retina and RPE | ||||
|
| ||||
| Rpe65 | 114.07 | 57.02 | 25.44 | 1.94 |
|
| ||||
| Gcap1 | 1063.27 | 687.74 | 205.92 | 1.09 |
Abbreviations: Dhrs, dehydrogenase/reductase family member; Gcap, guanylate cyclase-activating protein; Rbp, retinol-binding protein; Rdh, retinol dehydrogenase; Rlbp, retinal binding protein; Rpe, retinal pigment epithelium.
All listed transcripts were detected at a level of 1 FPKM or higher (fragments per kilobase of exon per million fragments mapped) in RNA sequencing data (average of three biological replicates) from whole eye samples and indicated tissues.