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. Author manuscript; available in PMC: 2016 Dec 1.
Published in final edited form as: Annu Rev Vis Sci. 2016 Jul 18;2:197–234. doi: 10.1146/annurev-vision-111815-114407

Table 3. Transcript reads across different RNA sequencing experiments with whole eye tissue from 1-month-old B6 and Rho−/− mice and the retina and cultured primary RPE cells from B6 micea.

Genes Whole eye from
B6 mice
Retina from B6 mice Whole eye from
Rho−/− mice
RPE cells from
B6 mice

Retinol dehydrogenases

Rdh5 177.38 122.91 166.30 32.47

Rdh8 67.4 46.78 7.54 0.18

Rdh10 76.79 52.17 38.52 8.29

Rdh11 19.27 20.52 11.07 27.14

Rdh12 195.4 131.39 13.57 0.73

Rdh13 8.79 8.14 6.50 8.41

Rdh14 21.09 19.62 17.93 7.88

Dhrs3 104.7 41.73 34.11 8.28

Retinol-binding proteins

Rbp4 2.05 0.53 0.90 1.57

Rlbp1 354.00 226.98 137.88 36.86

Rbp1 90.74 12.36 103.43 26.73

Rbp2 6.20 0.08 122.79 0.00

Rbp3 654.90 1093.27 174.28 0.05

Control genes from the retina and RPE

Rpe65 114.07 57.02 25.44 1.94

Gcap1 1063.27 687.74 205.92 1.09

Abbreviations: Dhrs, dehydrogenase/reductase family member; Gcap, guanylate cyclase-activating protein; Rbp, retinol-binding protein; Rdh, retinol dehydrogenase; Rlbp, retinal binding protein; Rpe, retinal pigment epithelium.

a

All listed transcripts were detected at a level of 1 FPKM or higher (fragments per kilobase of exon per million fragments mapped) in RNA sequencing data (average of three biological replicates) from whole eye samples and indicated tissues.