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. Author manuscript; available in PMC: 2017 Nov 1.
Published in final edited form as: Epilepsia. 2016 Oct 13;57(11):1897–1906. doi: 10.1111/epi.13570

Restriction spectrum imaging reveals decreased neurite density in patients with temporal lobe epilepsy

Richard Q Loi a, Kelly M Leyden a, Akshara Balachandra a, Vedang Uttarwar a, Donald J Hagler Jr a,b, Brianna M Paul c,d, Anders M Dale a,b, Nathan S White a,b, Carrie R McDonald a,e
PMCID: PMC5118147  NIHMSID: NIHMS814185  PMID: 27735051

Abstract

Objective

Diffusion tensor imaging (DTI) has become a popular tool for delineating the location and extent of white matter injury in temporal lobe epilepsy (TLE). However, DTI yields nonspecific measures that are confounded by changes occurring within both the intracellular and extracellular environments. This study investigated whether an advanced diffusion method, restriction spectrum imaging (RSI) could provide a more robust measure of white matter injury in TLE relative to DTI due to RSI’s ability to separate intra-axonal diffusion (i.e., neurite density; ND) from diffusion associated with extra-axonal factors (e.g., inflammation; crossing fibers).

Methods

RSI and DTI scans were obtained on 21 patients with TLE and 11 age-matched controls. RSI-derived maps of ND, isotropic hindered (IH) and free (IF) water, and crossing fibers (CF) were compared to DTI-derived fractional anisotropy (FA) maps. Voxelwise and tract-based analyses were performed comparing patients with TLE to controls on each diffusion metric.

Results

Reductions in FA were seen primarily in frontotemporal white matter in TLE and were most pronounced proximal to the seizure focus. Reductions in ND corresponded to those seen in the FA maps; however, ND reductions were greater in magnitude, more lateralized to the epileptogenic hemisphere, and showed a broader pattern. Increases in IF/IH and effects from CFs also contributed to reduced FA in the ipsilateral parahippocampal cingulum and fornix, with decreases in IH extending into extratemporal regions. Reduced ND of the uncinate fasciculus was associated with longer disease duration, whereas FA was not associated with any clinical variables.

Significance

RSI may provide a more specific measure of white matter pathology in TLE, distinguishing regions primarily affected by axonal/myelin loss from those where CFs and increases in extracellular water also play a role. By providing a more specific measure of axonal/myelin loss, RSI-derived ND may better reflect overall white matter burden in epilepsy.

Keywords: diffusion tensor imaging, intracellular diffusion, fractional anisotropy, crossing fibers, restricted diffusion

INTRODUCTION

Temporal lobe epilepsy (TLE) is the most common localization-related epilepsy and may be highly refractory to medication management1. Although once considered to be a disease of the hippocampus, it is now well-appreciated that TLE is a network disorder associated with damage to multiple cortical and subcortical structures that extend well beyond the medial temporal lobes2; 3. In fact, studies using diffusion tensor imaging (DTI) have consistently revealed bilateral patterns of microstructural damage to multiple long-range association tracts, with greater compromise to fiber tracts ipsilateral and proximal to the seizure focus3–5. This is typically demonstrated by decreases in fractional anisotropy (FA) and/or increases in mean diffusivity (MD) along entire fiber tracts or within subsections of a tract, which are interpreted as reflecting axonal loss and demyelination of white matter within the affected regions.

Despite the unique insights obtained from traditional DTI, it is increasingly appreciated that FA and MD are nonspecific measures of cerebral pathology that are influenced by a number of tissue-related factors6. In addition to axonal loss and demyelination, decreases in FA obtained from the basic tensor model may reflect the presence of crossing fibers or increases in extracellular diffusion due to edema or inflammation7; 8. Given recent data suggesting that inflammation may play a role in the pathogenesis of TLE9, better understanding the neurobiology of decreased FA in temporal and extratemporal regions could help to guide treatments in patients with TLE or other epilepsy syndromes9.

In recent years, a number of advanced diffusion methods have emerged that extend beyond the tensor model and may provide more sensitive and/or specific measures of cerebral pathology in TLE6; 10–13. Diffusion kurtosis imaging (DKI), which is a statistical method that probes non-Gaussian diffusion and estimates diffusion heterogeneity14, has been applied in several studies of children12 and adults10; 11 with TLE. These studies have suggested that kurtosis measures reveal a broader and more robust pattern of microstructural abnormalities in TLE compared to conventional DTI, which may reflect DKI’s greater sensitivity to multiple pathologic factors including cell loss, inflammation, and axonal and dendritic reorganization. In addition, diffusion spectrum imaging (DSI), a high-angular diffusion imaging (HARDI) technique, has recently been combined with a multi-compartment diffusion model, the neurite orientation dispersion and density imaging (NODDI) model, to estimate structural connectivity and network properties in TLE13. This DSI study revealed that reduced FA in the medial temporal lobes was primarily driven by reductions in intracellular diffusion, commensurate with neurite loss (i.e., cell and axonal or myelin loss), whereas reduced FA in extratemporal regions was also driven by fiber orientation changes (i.e., high orientation dispersion index; ODI), potentially reflecting disorganized fiber orientation and packing. These studies suggest that advanced diffusion techniques, which aim to resolve intravoxel tissue properties, may provide more sensitive measures of network pathology in TLE.

In this study, we apply a new multi-compartment diffusion model, restriction spectrum imaging (RSI), which combines key properties of these existing methods to resolve whether decreases in FA in patients with TLE are better explained by decreased axonal/neurite density (ND), crossing fibers (CF), and/or increases in extracellular diffusion [i.e., isotropic hindered (IH) and free water (IF) diffusion]15. This new method is an extension of traditional HARDI techniques for reconstructing CFs and modeling complex orientation and structure, but within a clinically-feasible scan frame (4–8 minutes). Using multiple diffusion weightings (b-values), RSI further distinguishes hindered and restricted diffusion pools in the extracellular and intracellular compartments, respectively, and models both spherically-restricted (within cells) and cylindrically-restricted (within axons) diffusion (see Figure 1). Isolating the anisotropic, restricted compartment within axons is important as this allows for estimates of the axonal density and orientation distribution that are distinct from changes in extracellular diffusion. Thus, RSI’s ability to probe both the scale and geometry of tissue microstructure positions it well to determine whether regional reductions in DTI-derived FA values are due to axonal loss/demyelination versus extracellular changes (e.g., CSF-filled spaces; inflammation) or CFs. We have previously shown the advantage of RSI over standard DTI for reconstructing fiber tracts in regions of peritumoral edema8, identifying regions of high cellularity in patients with high grade glioma16, and evaluating response to therapy in patients treated with bevacizumab17. We now extend the application of RSI to unveiling the complex cytoarchitecture of white matter injury in patients with TLE.

Figure 1.

Figure 1

A) Illustration of the full RSI “spectrum.” This model takes into account both the size scale and geometry of diffusion, separating free, hindered, and restricted water compartments within a voxel. The model in this paper included the following components: cylindrically-restricted (ND), crossing fiber (CF), and both isotropic hindered (IH) and free water (IF) compartments. B). Axial slice of fractional anisotropy (FA), ND, IH, IF, and CF maps. Insets illustrate a region in which crossing fibers reduce FA, but ND is not affected.

MATERIALS AND METHODS

Participants

This study was approved by the Institutional Review Board at the University of California, San Diego (UCSD) and all participants provided informed consent according to the Declaration of Helsinki. Twenty-one patients with medically refractory TLE and 11 age-matched controls had volumetric MRI, DTI/RSI, and clinical data that allowed for inclusion in the study. All patients were under evaluation for surgical treatment at the UCSD Epilepsy Center. They were diagnosed with medically refractory epilepsy by board-certified neurologists with expertise in epileptology, according to the criteria defined by the International League Against Epilepsy. Patients were classified as left TLE (LTLE; n=10) or right TLE (RTLE; n=11) based on seizure onsets recorded by video-EEG, seizure semiology, and neuroimaging results. Clinical MRI scans were available on all patients (i.e., T1-weighted, T2-weighted, and coronal FLAIR sequences with 1mm slices through the mesial temporal lobe). MRIs were visually inspected by a board-certified neuroradiologist for detection of mesial temporal sclerosis (MTS) and the exclusion of contralateral temporal lobe structural abnormalities. In 8 patients, MRI findings suggested the presence of ipsilateral MTS. No patients showed evidence of contralateral MTS or extra-hippocampal pathology on clinical MRI. Control participants were screened for neurological or psychiatric conditions.

MRI acquisition

All patients were seizure-free per self-report for a minimum of 24 hours prior to the MRI scan. All brain imaging was performed on a General Electric Discovery MR750 3T scanner with an 8-channel phased-array head coil. Image acquisition included a conventional three-plane localizer, GE calibration scan, a T1-weighted 3D structural scan (TR = 8.08 msec, TE = 3.16 msec, TI = 600 msec, flip angle = 8°, FOV = 256 mm, matrix = 256 × 192, slice thickness = 1.2mm), and for diffusion MRI, a single-shot pulsed-field gradient spin-echo EPI sequence (TE/TR = 96ms/17s; FOV = 24cm, matrix = 128×128×48; axial; 2.5 mm isotropic resolution, resampled to 1.875mm isotropic). Diffusion data used for the standard DTI analysis were acquired with b-value = 0 and 1000 mm2/s with 30 unique gradient directions. Diffusion data used for the RSI analyses were acquired with b = 0, 500, 1500, and 4000 s/mm2, with 1, 6, 6, and 15 unique gradient directions for each b-value, respectively (total RSI scan time = ~5 min). These parameters were selected to optimize statistical efficiency, based on simulations described in White & Dale18; 19. For use in nonlinear B0 distortion correction, two additional b=0 volumes were acquired with either forward or reverse phase-encode polarity.

DTI and RSI processing

Preprocessing of the diffusion data included correction for B0 distortion, eddy current distortions, gradient nonlinearity distortions, and head motion, as well as registration to the T1-weighted structural image. For B0 distortion correction, a reverse gradient method was used20. This method provides superior accuracy and better cross-modality registration relative to the field mapping approach. A detailed description of the image processing is provided elsewhere21.

DTI-derived FA and MD were calculated based on a tensor fit to the b = 1000 data. Conversely, RSI utilizes a multi-b-shell acquisition in conjunction with a linear mixture model to isolate diffusion signals from separable hindered, restricted, and free water diffusion compartments within a voxel. Technical details describing the RSI mathematical framework are described in full elsewhere15; 16; 22. RSI-based measures of ND, CF, IH and IF were calculated from the estimated volume fraction of the 2nd and 4th order spherical harmonics of the cylindrically-restricted (ND) compartment, the 4th order spherical harmonic component of the cylindrically-restricted compartment (CF), and the isotropic hindered (IH) and free water compartments (IF), respectively. All measures were normalized to the squared sum of squares of all model coefficients. The RSI model was fit to the data using least-squares estimation with Tikhonov regularization16.

Whole Brain Map Processing

VBA analysis

VBA was conducted according to the ANTS-Groupwise processing pipeline—a modified TBSS processing pipeline described by Schwarz et al.23 that has been shown to be more sensitive for detecting changes and to have greater specificity in resisting false positives from mis-registration relative to the existing pipeline. Individual T1-weighted images were iteratively registered to form a group-wise map using the Advanced Normalization Tools-Symmetric Normalization (ANTS-SyN) ver-1.9.4 algorithm24. Group-wise T1-weighted templates were formed for LTLE and RTLE combined with controls through the ANTS toolbox. Individual T1 warps to the group-wise template were applied to individual whole-brain diffusion maps to better register maps by avoiding logical circularity in intra-measure registrations25. The diffusion maps were further binarized with white matter masks generated by FMRIB’s Automated Segmentation Tool (FAST) using individual registered T1-weighted images and voxels were only included if nonzero in 70% or more of the co-registered subjects23. Each DTI or RSI-derived diffusion map was smoothed with a 5mm full-width at half-maximum Gaussian kernel. Statistical comparisons were performed with a general linear model design of a two independent sample t-test with 5000 permutations run on FSL’s Randomize that identified voxel-wise differences between each patient group and healthy controls. Voxelwise analysis utilized Threshold-Free Cluster Enhancement (TFCE) with three dimensional voxel optimization to enhance clustering26. All VBA maps were corrected for multiple comparisons using a false discovery rate threshold of q < 0.05.

Fiber tract calculations

Fiber tract values for each of the DTI and RSI diffusion measures were derived using a probabilistic diffusion tensor atlas that was developed using in-house software written in Matlab and C++ (i.e., AtlasTrack). A full description of the atlas and the steps used to create the atlas are described elsewhere27. For each participant, T1-weighted images were used to nonlinearly register the brain to a common space, and diffusion tensor orientation estimates were compared to the atlas to obtain a map of the relative probability that a voxel belongs to a particular fiber given the location and similarity of diffusion orientations. Voxels identified with FreeSurfer’s automated brain segmentation as CSF or gray matter were excluded from the fiber ROIs. Average diffusion metrics were calculated for each fiber ROI, weighted by fiber probability, so that voxels with low probability of belonging to a given fiber contributed minimally to average values. In the current study, this probabilistic atlas-based method was used to reconstruct the following right and left hemisphere fiber tracts due to evidence of their disruption in TLE2: fornix (FX), parahippocampal cingulum (PHC), dorsal cingulum bundle (CING), uncinate fasciculus (UNC), inferior longitudinal fasciculus (ILF), and the inferior frontal occipital fasciculus (IFOF) (see Figure 2).

Figure 2.

Figure 2

Sagittal rendering of six fiber tracts of interest in this study derived using a probabilistic diffusion tensor atlas (i.e., AtlasTrack) and projected onto a T1-weighted image. CING = dorsal cingulum; PHC = parahippocampal cingulum; FX = fornix; UNC = uncinate fasciculus; IFOF = inferior frontal occipital fasciculus; ILF = inferior longitudinal fasciculus.

Structural MRI processing

T1-weighted images were corrected for non-linear warping caused by non-uniform fields created by the gradient coils. Image intensities were corrected for spatial sensitivity inhomogeneities in the 8-channel head coil by normalizing with the ratio of a body coil scan to a head coil scan. Hippocampal volumes were obtained using Freesurfer’s subcortical segmentation pipeline and individually checked for accuracy by a expert anatomist and image analyst.

Statistical Analysis

Analysis of variance (ANOVAs) and independent t-tests were used to test for differences among the groups in key demographic and clinical variables. Whole-brain voxel-based analysis (VBA), comparing patients with LTLE and RTLE separately to controls, was performed for DTI (FA and MD) and RSI (ND, CF, IH and IF) metrics using voxelwise t-tests. Tract-based region of interest (ROI) analyses were also performed between each patient group’s ipsilateral and contralateral fiber tracts and those of controls for each fiber tract using t-tests. Pearson correlations were used to examine relationships between our diffusion measures and clinical variables (i.e., age of seizure onset, disease duration, and seizure frequency). For fiber ROI analysis, a Bonferroni-corrected p-value of p<.00416 was used to correct for multiple comparisons.

RESULTS

Table 1 displays demographic and clinical variables for the patient and control groups. There were no statistically significant differences among the controls, LTLEs, or RTLEs in age, (F [2,29] = .634, p > .05). However, there was a group difference in years of education (F [2,29] = 4.02, p<.05) with controls achieving a higher level of education than either patient group. The distribution of gender across the three groups was comparable (χ2[2] = 1.90, p >.05). There were no statistically significant differences between the two patient groups in disease duration (t[17] = 1.63, p >.05), age at seizure onset (t [17]= −.77, p > .05), seizure frequency (t[17] = .47, p >.05), or the number of patients with MTS (χ2[1] = 1.56, p > .05). However, the volume of the ipsilateral hippocampus was slightly smaller in patients with LTLE compared to those with RTLE (t[19] = −2.44, p = .025). Contralateral hippocampal volumes (HCVs) did not differ between the patient groups (t[19] = .51, p > .05). Both patient groups’ ipsilateral HCVs were smaller when compared to HCVs on the corresponding side for the controls (t[19] = 4.09, p = .001, and t[20] = 2.50, p = .04, LTLE and RTLE, respectively), but their contralateral HCVs were not statistically different from the controls (t[19] = .508, p > .05, and t[20] = .93, p > .05, LTLE and RTLE, respectively).

Table 1.

Demographic and clinical characteristics of the participants

Control (n=11) LTLE (n=10) RTLE (n=11)
Age 37.79 (17.94) 43.50 (12.07) 38.09 (12.88)
Gender 8 M, 3 F 5 M, 5 F 5 M, 6 F
Education (years) 16.91 (2.77) 14.40 (1.65) 14.60 (2.37)
Age of Onset (years) N/A 15.40 (19.24) 21.65 (16.72)
Duration (years) N/A 28.20 (16.36) 17.65 (15.04)
MTS Status N/A 5+, 5− 3+, 8−
Seizure Frequency (# per month) N/A 10.70 (17.38) 6.12 (12.93)
Left Hippocampal Volume (mm3) 4089.85 (396.85) 2843.76 (922.66) 3871.69 (669.41)
Right Hippocampal Volume (mm3) 4115.62 (595.79) 3998.87 (434.87) 3699.19 (679.07)

VBA analysis

Figure 3 reveals voxelwise maps of significant decreases in FA and ND and increases in MD and IF in each patient group compared to controls. Suprathreshold effects were minimal in the IH VBA maps and largely overlapped with IF. As can be seen, patients with LTLE showed decreased FA primarily in the left anterior temporal lobe with additional regions of decreased FA in the inferior prefrontal and retrosplenial white matter. Increases in MD were more restricted with few exceeding our FDR-corrected threshold. Compared to FA, ND maps revealed a broader and more robust pattern of decreases in LTLE, with strong lateralization to the left hemisphere. In addition, small areas of increased IF are observed in left temporal lobe regions in and around regions of decreased ND.

Figure 3.

Figure 3

Voxel-based group comparisons between patients with right TLE (RTLE) or left TLE (LTLE) and age-matched controls using ANTS registration. Areas of red-yellow represent decreased FA and ND and increased MD and IF in patients compared to controls. All images are clustered and FDR-corrected at q<.05.

In patients with RTLE, there were few regions in which decreased FA or MD survived our FDR-correction in the voxelwise analysis. However, a more lenient threshold (p<.02) showed strong trends in the data of decreased FA and increased MD that follow the same pattern observed in LTLE (see supplementary figure). Similar to the pattern seen in LTLE, ND maps in RTLE revealed a broad and robust pattern of ND decreases, with strong lateralization to the right anterior temporal and prefrontal region. Minimal increases in IF were noted. There were no suprathreshold differences in CF between controls and patients with LTLE or RTLE in the voxelwise analysis.

Tract-based analysis

Because patients with LTLE and RTLE showed a similar pattern of reductions in FA and ND that differed mostly in magnitude (i.e., LTLE showed more pronounced reduction in FA relative to RTLE), we combined the patient groups to examine diffusion parameters in ipsilateral and contralateral fiber tracts (see Table 2). Patients with TLE showed ipsilateral and contralateral reductions in FA and ND in the FX, CING, PHC, UNC and ILF. In addition, ND only was reduced in the ipsilateral IFOF. Complementing our voxelwise analysis, the magnitude of the effects was consistently larger with ND than with FA (Cohen’s d) particularly in the contralateral UNC and ipsilateral IFOF where effect sizes for ND were 33 and 66% higher, respectively. In addition, increases in IF and MD were observed in the ipsilateral FX [t(30) = −3.5, p = .001) for IF; t(30) = −3.0, p = .004 for MD] and PHC [ t(30) = −3.3, p = .002 for IF; t(30) = −2.9, p = .001 for MD)] in patients compared to controls. Increases in IH were also observed in the ipsilateral FX [ t(30) = 3.3, p = .002), ipsilateral CING [t(30) = 3.3, p = .002)], and bilateral PHC [ t(30) = 4.1, p = .0003) for ipsilateral; t(30) = 3.3, p = .002 for contralateral]. There was also a strong trend toward increased IH in the ipsilateral UNC [t(30) = 2.9, p = .007)]. The effects of CFs were also greater in controls in the ipsilateral FX [ t(30) = 3.1, p = .002)] and PHC [ t(30) = 3.3, p = .003)], suggesting more complex fiber structure in controls.

Table 2.

FA and ND of the ipsilateral and contralateral fiber tracts for Controls and Patients with TLE

Controls TLEs
Mean Mean T-Score p-value Cohen’s d
FX

  Ipsilateral*^


  Contralateral
FA 0.3030
(0.02137)
0.2353
(0.05535)
3.884 0.000524 1.6136
ND 0.4354
(0.02860)
0.3011
(0.09440)
4.577 0.000077 1.9255
FA 0.3030
(0.02137)
0.2481
(0.05081)
3.412 0.001866 1.4085
ND 0.4354
(0.02860)
0.3269
(0.08955)
3.890 0.000516 1.6322
CING

  Ipsilateral^


  Contralateral
FA 0.4719
(0.01929)
0.4101
(0.04546)
4.285 0.000173 1.7697
ND 0.6698
(0.02674)
0.5799
(0.04676)
5.869 0.000002 2.3602
FA 0.4719
(0.01929)
0.4164
(0.04882)
3.601 0.001128 1.6649
ND 0.6698
(0.02674)
0.5963
(0.05194)
4.379 0.000134 1.7792
PHC

  Ipsilateral*^


  Contralateral^
FA 0.3434
(0.04255)
0.2163
(0.09259)
4.286 0.000183 1.7639
ND 0.4828
(0.07161)
0.3012
(0.10740)
5.011 0.000025 1.9895
FA 0.3434
(0.04255)
0.2397
(0.10456)
3.136 0.003813 1.2991
ND 0.4828
(0.07161)
0.3342
(0.11078)
4.016 0.000366 1.5931
UNC

  Ipsilateral


  Contralateral
FA 0.4473
(0.03507)
0.3839
(0.05778)
3.302 0.002553 1.3265
ND 0.6319
(0.03244)
0.5679
(0.07125)
2.809 0.003796 1.1561
FA 0.4473
(0.03507)
0.4180
(0.03775)
2.119 0.042812 0.8041
ND 0.6319
(0.03244)
0.5940
(0.03041)
3.246 0.002948 1.2054
ILF

  Ipsilateral


  Contralateral
FA 0.4733
(0.02371)
0.4441
(0.04467)
2.014 0.053091 0.8165
ND 0.6773
(0.01661)
0.6379
(0.05623)
2.255 0.031604 0.9503
FA 0.4733
(0.02371)
0.4569
(0.04080)
1.224 0.230354 0.4914
ND 0.6773
(0.01661)
0.6490
(0.04381)
2.055 0.048681 0.8542
IFOF

  Ipsilateral


  Contralateral
FA 0.4885
(0.02485)
0.4733
(0.03149)
2.774 0.009435 0.5358
ND 0.6854
(0.02462)
0.6394
(0.03284)
4.066 0.000318 1.5849
FA 0.4885
(0.02485)
0.4793
(0.03340)
0.806 0.426731 0.3125
ND 0.6854
(0.02462)
0.6600
(0.03867)
1.968 0.058393 0.7835
*

= Fiber tracts that demonstrate a significant difference (p<.00416) in CF, MD, and IF between controls and TLEs.

^

= Fiber tracts that demonstrate a significant difference(p<.00416) in IH between controls and TLEs.

Correlation with clinical variables

Lower ND in the ipsilateral UNC was strongly associated with a longer disease duration (r = .66; p = .003), whereas there were no significant correlations between FA, MD, CF, or IF and any of the clinical variables in our patient cohort.

DISCUSSION

In this study, we demonstrate the value of a new advanced diffusion imaging technique, RSI, for better elucidating the nature of white matter injury in patients with TLE compared to traditional DTI. RSI’s advantage in this scenario stems from its ability to separate intracellular from extracellular diffusion while simultaneously modeling complex fiber structure (i.e., CFs). This ability to probe both the scale and geometry of tissue microstructure likely allows for a more precise estimate of axonal and/or myelin loss. In a group of patients with refractory TLE, we found reductions in ND that generally corresponded to decreases in FA. However, decreases in ND were greater in magnitude and showed a broader pattern of decreases compared to FA. This finding was demonstrated in both our voxelwise and tract-based analysis and is commensurate with a small, but growing literature demonstrating improved sensitivity of advanced diffusion imaging for delineating white matter pathology in epilepsy. Similar to studies indicating that DKI-derived measures (e.g., mean kurtosis) may provide a more sensitive measure of pathology10; 12; 28–30, we found the pattern of reduced ND to be more robust and congruent with known network abnormalities in TLE, which are most prominent within medial temporal/limbic networks ipsilateral and proximal to the seizure focus5 (Figure 3). However, it is important to note that whereas reduced kurtosis indicates a loss of diffusion heterogeneity—a metric that should correlate with a loss of diffusion restriction, and therefore, white matter pathology—RSI is a multi-compartment model that can more directly probe the nature of this pathology. That is, RSI quantifies the degree to which diffusional heterogeneity within a voxel is driven by decreases in intra-axonal water (i.e., loss of ND) versus increases in extracellular diffusion (i.e., increased IF and IH) while accounting for complex fiber orientation. Thus, similar to DSI with NODDI, RSI provides a biophysical model for separating different tissue compartments and modeling the geometry of the neurite compartment. However, RSI takes this one step further by also characterizing CFs and volume fractions of fibers in multiple directions. Whereas the ODI obtained from NODDI provides a single estimate of the dispersion of fibers within a voxel, RSI can further characterize the nature of dispersion (i.e., whether high dispersion reflects crossing fibers or just faned out fibers) and within a clinically-feasible time frame (i.e., DSI typically takes ~30 minutes to acquire compared to ~4–7 minutes for RSI).

The increased precision of this measure may be reflected by the fact that decreased ND, but not FA, was associated with longer disease duration in our patient cohort in the UNC. This association is particularly interesting given the proposed role of the UNC in seizure propagation31 as well as the vulnerability of this white matter tract in TLE32. Whether or not loss of neurites in the UNC is due to years of refractory seizures versus other treatment- or disease-related factors requires testing in longitudinal series. We propose that RSI-derived ND could provide a better means for capturing these changes than current DTI-based metrics.

In addition to our main finding of significant reductions in ND, increases in IF were found proximal to the epileptic focus in both the ipsilateral FX and PHC, whereas increases in IH extended into the ipsilateral CING and contralateral PHC in the fiber ROI analysis. In general, IF and IH appeared to be highly related in TLE, but with additional extratemporal increases seen for IH. However, increases in extracellular water did not appear to be a dominant source of pathology in the other fiber tracts. Increases in the hindered and free water fraction may reflect a number of pathological processes, including increased CSF in spaces surrounding axon/myelin loss and/or local tissue inflammation. The former is a more simplistic explanation and one that is supported by analysis of excised fornix tissue scanned at 7T33. However, surgical specimens from patients with TLE also suggest an increase in inflammatory infiltrates in excised temporal lobe tissue34 and recent PET studies have shown increases in biomarkers of inflammation (i.e., translocator protein; TSPO) in the bilateral temporal lobes in TLE35, suggesting ongoing local inflammation in patients with refractory seizures. Studies using advanced diffusion imaging in patients with multiple sclerosis36 and schizophrenia7 have recently linked an increase in the isotropic restricted and isotropic free water compartments, respectively, to neuroinflammation. However, histological validation of these in vivo diffusion metrics is primarily based on preclinical data37 whereas validation in humans is still limited (but see Wang et al.36). Although we are not able to provide unique biological explanations for increased IH versus IF in this study, future work with RSI will address whether these extracellular components can differentiate local tissue inflammation/edema from CSF-filled pockets, respectively.

We also found group differences in CFs in both the ipsilateral FX and PHC. The greater effect of CFs in these regions likely reflects a more complex fiber structure in controls (see Figure 4). CFs are ubiquitous in the brain and it is well-known that they contribute to FA decreases in some regions more than others. In the medial temporal lobe, the PHC is crossed by fibers of the perforant path and adjacent pathways, which run from the entorhinal cortex into the hippocampus38 and are known to be affected in TLE39. Figure 4 shows a voxel taken from the PHC in a patient and control. As can be seen, FA is lower in the control (i.e., represented by a more spherical tensor) due to the presence of CFs in this region, whereas FA is not reduced in the patient due to simplified fiber structure. Although the reason for this simplified fiber structure in TLE is unknown, it is possible that the dying off of perpendicular axons within the perforant path and adjacent fibers bundles leads to this simplified structure in patients, driving up FA values in the PHC in patients moreso than in controls. Like HARDI models, RSI can model this complex fiber structure, producing measures of ND and IH/IF fractions that are not affected by CFs.

Figure 4.

Figure 4

Example of a DTI-derived tensor and a RSI-derived fiber orientation distribution (FOD) from a voxel within the right PHC of a patient with RTLE and a control. As can be seen, the FOD reveals a more complex fiber orientation in the control (i.e., crossing fibers) that is not revealed in the DTI tensor. Conversely, the tensor and FOD appear similar in the patient due to a lack of crossing fibers, potentially due to axonal loss in fiber bundles perpendicular to the PHC.

Our study demonstrates the utility of RSI for delineating the nature of white matter pathology in TLE. Other strengths of our study include an analysis of white matter microstructure at both the voxelwise and tract-based levels and our use of an advanced image registration method (i.e., ANTS) that has been shown to be robust for groupwise diffusion-based analysis23. However, there are several limitations to our study that should be noted. First, the sample size is relatively small and we may not have had the power to detect subtle group differences in some fiber tracts that may be revealed with a larger cohort. However, it is important to note that we were able to capture many robust associations with ND with large effects sizes even in a small cohort. This could translate to needing fewer patients enrolled in clinical trials to demonstrate an effect when RSI- vs DTI-derived metrics are used. Second, we included patients with and without MTS in the same analysis. There is now considerable evidence that DTI-derived abnormalities are more pronounced in patients with radiological evidence of MTS2; 40. In our small sample, it is of note that patients with MTS demonstrated a trend toward lower ND in the PHC relative to those without MTS (p = .054) and this likely contributed to the stronger patterns in FA and ND loss seen in the VBA maps in LTLE (the group with a greater number of patients with MTS) relative to RTLE. However, our group of MTS+ (N = 8) and MTS− (N = 13) were too small and unbalanced to analyze separately in this initial study. Future research with a larger patient sample will test the utility of RSI-derived measures in each patient cohort separately. Although the RSI acquisition scheme was selected to optimize scanning and statistical efficiency, the number of parameters estimated is on the cusp given the available data. Additional information may be gleaned from collecting more data. However, this would result in a longer scan time, likely decreasing its clinical feasibility without significantly improving the signal to noise18; 19. Finally, although we believe that our multi-compartment diffusion model offers advantages over many existing models for better elucidating the nature of white matter changes within a clinically feasible time frame, as with most diffusion techniques, histological validation of the RSI-model is primarily limited to preclinical data15 and will require further validation in patients with TLE. As numerous promising advanced diffusion techniques are now emerging, there is also a significant need to directly compare these techniques to one another and to determine which method(s) provides the most clinicially-meaningful information for patients with TLE and other epilepsy syndromes.

Supplementary Material

Supp Fig S1

Supplementary Figure. Voxel-based group comparisons between patients with right TLE (RTLE) or left TLE (LTLE) and age-matched controls using ANTS registration. Areas of red-yellow represent decreased FA and ND and increased MD and IF in patients compared to controls. All images are clustered and FDR-corrected at q<.05, with the exception of the FA and MD maps for RTLEs, which are thresholded with a very liberal value of p<.02 in order to reveal trends in the RTLE data (grey box).

Supp Table S1-S2

KEY POINTS.

  • RSI is an advanced, multi-compartment diffusion model that separates intra- from extracellular diffusion and can model complex fiber orientation and structure

  • RSI-derived “neurite density” (ND) shows a more robust and lateralized pattern of white matter compromise in TLE compared to DTI-derived FA

  • Reduced ND, but not FA, of the uncinate fasciculus is associated with longer disease duration in TLE

  • RSI-derived ND may provide a more sensitive and specific measure of white matter compromise in TLE compared to FA by more precisely estimating axonal and/or myelin loss.

Acknowledgments

FUNDING

This work was supported by the National Institute of Neurological Disorders and Stroke (R01NS065838 to CRM). The NIH had no role in the study design; in the collection, analysis and interpretation of data; in the writing of the report; or in the decision to submit the article for publication.

We wish to thank Holly M. Girard for assistance in data collection. We also wish to thank the patients of the UCSD Epilepsy Center who devoted their time and clinical data for research purposes.

Biography

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Richard Q. Loi is a UC San Diego masters graduate and a medical student at Wayne State SOM, USA

Footnotes

None of the authors listed on this manuscript has a conflict of interest to disclose. We confirm that we have read the Journals’ position on issues involved in ethical publication and affirm that this report is consistent with those guidelines.

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Associated Data

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Supplementary Materials

Supp Fig S1

Supplementary Figure. Voxel-based group comparisons between patients with right TLE (RTLE) or left TLE (LTLE) and age-matched controls using ANTS registration. Areas of red-yellow represent decreased FA and ND and increased MD and IF in patients compared to controls. All images are clustered and FDR-corrected at q<.05, with the exception of the FA and MD maps for RTLEs, which are thresholded with a very liberal value of p<.02 in order to reveal trends in the RTLE data (grey box).

Supp Table S1-S2

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