Table 1. The top 25 up-regulated genes that are induced greater than 2-fold by a combination of loss of Rb and hypoxia when compared to negative controls.
| Gene Name | Probe Name | Fold Induction (vs shSCX-N) | Hypoxia Inducible/HIF1-regulated | ||
|---|---|---|---|---|---|
| shRb-N | shSCX-HYP | shRb-HYP | |||
| HTR5A | A_23_P42565 | 2.07 | 27.41 | 256.40 | [44] |
| PLOD2 | A_33_P3318581 | 2.53 | 24.26 | 219.02 | [9, 42, 44] |
| SLC16A3 | A_23_P158725 | 1.73 | 24.85 | 200.17 | [45] |
| ATP4A | A_23_P430728 | 2.46 | 12.53 | 157.93 | * |
| PLA2G4D | A_33_P3361611 | 1.15 | 10.05 | 97.72 | * |
| NIM1 | A_23_P254863 | 1.32 | 5.73 | 91.57 | * |
| CYP26A1 | A_23_P138655 | 1.15 | 2.87 | 68.51 | * |
| CXCR4 | A_23_P102000 | 1.30 | 2.65 | 62.56 | [43] |
| KISS1R | A_33_P3231357 | 0.61 | 8.51 | 61.94 | * |
| ANGPTL4 | A_33_P3295358 | 1.92 | 3.63 | 53.17 | [39, 44] |
| GPR26 | A_23_P305581 | 0.98 | 9.84 | 53.00 | * |
| MYBPC2 | A_33_P3257182 | 1.18 | 3.74 | 50.39 | * |
| FOS | A_23_P106194 | 1.47 | 1.41 | 49.01 | [44] |
| PPFIA4 | A_23_P420692 | 1.61 | 8.32 | 39.76 | [47] |
| CA9 | A_23_P157793 | 1.18 | 2.09 | 28.63 | [42, 44, 48] |
| NFATC4 | A_33_P3250083 | 1.52 | 4.70 | 21.97 | [42] |
| PFKFB4 | A_24_P362904 | 1.53 | 2.94 | 21.82 | [41, 42, 44] |
| PCP4L1 | A_32_P214665 | 1.97 | 2.51 | 21.02 | * |
| RORA | A_23_P26124 | 1.40 | 2.57 | 20.81 | [40] |
| AMPD3 | A_24_P304154 | 0.91 | 0.89 | 19.43 | * |
| ALDOC | A_23_P78108 | 1.46 | 4.85 | 19.33 | [42, 44] |
| ENO2 | A_24_P236091 | 1.80 | 2.61 | 19.09 | [42] |
| SCNN1G | A_23_P206626 | 1.10 | 1.30 | 19.01 | * |
| STC1 | A_23_P314755 | 1.10 | 4.42 | 19.00 | [38] |
| NDRG1 | A_23_P20494 | 1.19 | 6.80 | 18.60 | [37, 46] |
The (*) denotes genes containing putative HREs identified in the in silico consensus ARNT:HIF1α binding sequence analysis (Supplementary Data File 1).