Figure 3. Analysis of global transcriptome changes modulated by LY500307.
Total RNA was isolated from U87 cells that were treated with either vehicle or LY500307 for 48 h using RNeasy mini kit and the quality of RNA was tested using a Bio-analyzer and subjected to RNA sequencing. (A) heat map of differentially expressed genes between vehicle and LY500307 is shown. (B) Differentially expressed genes were subjected to pathway analysis using IPA software and the top five associated network functions of differentially expressed genes are shown. (C) The selected top canonical pathways are shown. (D–E) U87 cells that were treated with either vehicle or LY500307 for 48 h and differentially expressed genes that were upregulated or downregulated were validated using qRT-PCR. F, U251 cells were treated with either vehicle or LY500307 for 48 h and differentially expressed genes were validated using qRT-PCR.
