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. 2015 Oct 22;163(3):571–582. doi: 10.1016/j.cell.2015.10.009

Figure 2.

Figure 2

Y. pestis Depth of Coverage Plots

(A–D) Depth of coverage plots for (A) CO92 chromosome, (B) pCD1, (C) pMT1, (D) pPCP1. Outer ring: Mappability (gray), genes (RNA: black, transposon: purple, positive strand: blue, negative strand: red), RISE505 (blue), RISE509 (blue), Justinian plague (orange), Black Death plague (purple), modern Y. pestis D1982001 (green), Y. pseudotuberculosis IP32881 (red) sample. The modern Y. pestis and Y. pseudotuberculosis samples are included for reference. The histograms show sequence depth in 1 kb windows for the chromosome and 100 bp windows for the plasmids with a max of 20X depth for each ring. Arrow 1: ymt gene, arrow 2: transposon at start of missing region on pMT1, arrow 3: transposon at end of missing region on pMT1, arrow 4: pla gene, arrow 5: missing flagellin region on chromosome. The plots were generated using Circos (Krzywinski et al., 2009). See also Tables S2, S3 and S8.