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. 2015 Jun 25;60(10):581–587. doi: 10.1038/jhg.2015.68

Table 1. Category of SNPs on the Japonica array.

Category Number of SNPsa Array occupancy rate
Tag SNPs (including X chromosome) 638 269 96.8%
Pharmacogenomics markers 2028 0.31%
Y chromosome 275 0.04%
Mitochondria 70 0.01%
NHGRI GWAS catalog 10 798 1.64%
HLA 3906 0.59%
Untaggable functional SNPs 3990 0.61%
Total 659 253 —

Abbreviations: GWAS, genome-wide association studies; SNP, single nucleotide polymorphism.

a

Some SNPs are overlapped among categories.