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. 2015 Jul 1;6(1):127. doi: 10.1186/s13287-015-0116-z

Table 2.

Complementarity analysis of tRNA species to 3′ untranslated regions of protein-coding genes

Query Query sequence Hit length e value Bitscore Gene name Conservation value Normalized conservation value
tRNA; Glu; CTC AGTGGTTAGGATTCGGCGCTCTCACCGCCGCGGCCC 14 0.19 28.2 GOLGA6A 0.510 0.970
tRNA; Glu; TTC TCCCTGGTGGTCTAGTGGCTAGGATTCGGCGCTTT 24 0.012 32.2 TFCP2L1 0.146 1.067
14 0.19 28.2 NELF -0.303 0.962
17 0.74 26.3 KIAA0513 -0.367 1.013
13 0.74 26.3 ZBTB45 -0.447 0.950
13 0.74 26.3 HHIPL1 -1.103 0.808
13 0.74 26.3 HSP90AA1 -0.248 0.982
13 0.74 26.3 TULP4 1.937 1.345
13 0.74 26.3 SMAD3 0.259 1.001
13 0.74 26.3 RPS19 -0.474 0.984
13 0.74 26.3 ZNF662 0.140 0.990
13 0.74 26.3 AC104841.2 2.810 1.542
tRNA; Gly; GCC GCATGGGTGGTTCAGTGGGAGAATTCTCGCCT 18 0.19 28.2 PHF13 0.042 0.914
14 0.19 28.2 KDSR -0.243 0.904
14 0.19 28.2 PLAGL2 0.634 0.881
13 0.74 26.3 NOX5 -0.231 0.982
13 0.74 26.3 EPM2AIP1 0.373 0.996
13 0.74 26.3 GTF3C1 -0.476 1.095
13 0.74 26.3 GPR110 0.293 1.053
13 0.74 26.3 TPI1 0.241 0.971
13 0.74 26.3 PPP2R1B -0.302 0.875
13 0.74 26.3 LUZP2 0.125 0.998
13 0.74 26.3 VPS41 -0.243 0.977
13 0.74 26.3 SSR1 0.187 1.025
13 0.74 26.3 RUNX2 1.358 0.956
13 0.74 26.3 MAP1LC3B -0.254 0.890
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCG 14 0.19 28.2 GCM1 0.127 1.032
17 0.74 26.3 SLC2A13 0.507 0.983
13 0.74 26.3 GTF3C1 -0.476 1.095
13 0.74 26.3 HHLA2 -0.075 1.004
13 0.74 26.3 TPI1 0.241 0.971
13 0.74 26.3 PEG10 -0.126 0.806
13 0.74 26.3 EMR2 -0.166 0.954
13 0.74 26.3 SSR1 0.187 1.025
11 0.7 22.3 THAP5 0.155 0.979
11 0.7 22.3 THAP5 0.393 1.029
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCTG 14 0.19 28.2 GCM1 0.127 1.032
17 0.74 26.3 SLC2A13 0.507 0.983
13 0.74 26.3 GTF3C1 -0.476 1.095
13 0.74 26.3 HHLA2 -0.075 1.004
13 0.74 26.3 TPI1 0.241 0.971
13 0.74 26.3 PEG10 -0.126 0.806
13 0.74 26.3 EMR2 -0.166 0.954
13 0.74 26.3 SSR1 0.187 1.025
11 0.73 22.3 THAP5 0.155 0.979
11 0.73 22.3 THAP5 0.393 1.029
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCTGCCACGCGGGAGGCCCGGGT 20 0.012 32.2 SOX11 0.180 0.752
14 0.19 28.2 GCM1 0.127 1.032
17 0.74 26.3 SLC2A13 0.507 0.983
17 0.74 26.3 FAM57B -0.158 0.849
13 0.74 26.3 HHLA2 -0.075 1.004
13 0.74 26.3 C1orf159 -0.663 0.984
13 0.74 26.3 KLC2 -0.224 0.835
13 0.74 26.3 PEG10 -0.126 0.806
13 0.74 26.3 DRG2 -0.468 0.817
13 0.74 26.3 VPRBP 1.514 0.913
13 0.74 26.3 TRIM62 -0.098 0.921
13 0.74 26.3 EMR2 -0.166 0.954
13 0.74 26.3 ANXA8L2 2.926 1.223