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. 2015 May 8;43(Web Server issue):W362–W369. doi: 10.1093/nar/gkv463

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© The Author(s) 2015. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 2. — Topological analysis of the INO80 - nucleosome complex by applying the Markov Cluster (MCL) Algorithm in the network diagram. (A) Subunits non-clustered (all proteins blue colored). (B) Subunits clustered with the MCL parameters expansion=2 and inflation=1 separates the Nhp10 subcomplex (light blue). (C) Subunits clustered with expansion=1 and inflation=3 identifies several INO80 subcomplexes. (D) Proteins clustered like in (C) with crosslinks filtered by the identification score (cut-off 27).