Figure 2.
A search workflow to find genes involved in metabolic pathways. (A) To find a gene of interest, either search or BLAST can be used. With search, the keywords can be the gene ID (e.g. AGAP004786), the gene name (e.g. pyruvate dehydrogenase) or the gene symbol (not available for this example). If using BLAST, click on the best transcript or protein hit and follow the ‘Browse Genome’ icon to the genome browser. (B) In the genome browser gene tab, there will be a link called ‘Pathways’. Click on this link to load the pathways table. Follow the link in the top hit, ‘aga00010’. (C) This is the glycolysis/gluconeogenesis cycle in the KEGG pathways. The notation and color coding of the pathways are described in the ‘Help’ link located in the top right-hand side.