Table 2.
Published platelet RNA-seq (long-RNA) data sets
| Reference | 1 | 20 | 21 | 23 |
|---|---|---|---|---|
| Platform | Illumina | ABI/LT SOLiD | ABI/LT SOLiD | Illumina |
| No. samples | 4 | 4 | 10 | 4 |
| Species | 2 human/2 mouse | Human | Human | Human |
| Gender | 1 male/1 female of each species | ND | 10 males | 3 males/1 female |
| Race | ND | ND | 5 black, 5 white | ND |
| Leukocyte depletion | CD45 (Miltenyi) | CD45 (Miltenyi) | CD45 (Miltenyi) | Pan-Leuko (Dynabeads) |
| Reads | 36 bp, paired end, unstranded | 50 bp, single end, stranded (30-bp, stranded small RNA reads also available) | 50 bp, single end, stranded | 100 bp, single end, unstranded 100 bp, paired end, stranded |
| Sample prep | Poly-A+ RNA | Total RNA and rRNA-depleted RNA | Total RNA | rRNA depleted and poly-A+/5′ end–tagged RNA |
ND, no data.