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. 2014 Mar 3;15(3):R42. doi: 10.1186/gb-2014-15-3-r42

Table 4.

Results summary of genome scale data

Scaffolder
 Read mapper
 S. aureus
P. falciparum
Human chromosome 14
    % Correct joins found % Joins incorrect Score % Correct joins found % Joins incorrect Score % Correct joins found % Joins incorrect Score
ABySS
 abyss-map
 59.3
 2.0
 0.87
 61.5
 1.2
 0.85
 47.1
 0.5
 0.83
Bambus2
 Bowtie 2
 56.9
 2.1
 0.82
 NAa
 NAa
 NAa
 51.6
 1.5
 0.72
BWA
 57.5
 0.0
 0.86
 NAa
 NAa
 NAa
 54.0
 2.1
 0.69
MIP
 Bowtie -v 0
 1.2
 0.0
 0.82
 89.8
 4.0
 0.75
 34.5
 4.7
 0.43
Bowtie -v 3
 0.0
 NA
 0.82
 89.3
 4.8
 0.68
 42.8
 7.5
 0.10
Bowtie 2
 0.0
 NA
 0.82
 86.9
 6.0
 0.65
 NAa
 NAa
 NAa
BWA
 0.0
 NA
 0.82
 86.0
 8.0
 0.42
 NAa
 NAa
 NAa
Opera
 Bowtie
 67.1
 8.9
 0.65
 69.2
 2.7
 0.74
 64.5
 0.4
 0.88
BWA
 64.7
 12.2
 0.56
 69.1
 3.0
 0.72
 63.9
 1.1
 0.84
SCARPA
 Bowtie -v 0
 50.3
 8.7
 0.72
 79.6
 4.7
 0.39
 52.8
 1.4
 0.80
Bowtie -v 3
 49.1
 10.9
 0.31
 80.8
 4.5
 0.41
 52.6
 1.4
 0.80
Bowtie 2
 46.1
 17.2
 0.53
 78.9
 4.8
 0.39
 53.7
 1.5
 0.79
BWA
 46.7
 7.1
 0.77
 79.7
 4.8
 0.40
 53.6
 1.4
 0.80
SGA
 Bowtie 2
 49.7
 1.2
 0.88
 52.8
 0.9
 0.80
 49.0
 0.0
 0.85
BWA
 43.1
 1.4
 0.88
 51.1
 5.2
 0.65
 41.1
 0.4
 0.82
SOAP2
 SOAP2
 78.4
 8.4
 0.68
 64.3
 3.7
 0.76
 79.0
 2.4
 0.80
SOPRA
 Bowtie -v 0
 53.3
 2.2
 0.85
 87.5
 0.8
 0.97
 66.1
 0.4
 0.90
Bowtie -v 3
 41.3
 4.2
 0.80
 83.6
 0.8
 0.95
 52.3
 2.2
 0.74
Bowtie 2
 24.0
 4.8
 0.80
 75.4
 0.8
 0.91
 NAa
 NAa
 NAa
BWA
 25.1
 6.7
 0.77
 81.5
 0.6
 0.95
 NAa
 NAa
 NAa
SSPACE
 Bowtie -v 0
 65.9
 7.6
 0.72
 63.0
 1.4
 0.85
 44.0
 0.3
 0.83
  Bowtie -v 3 62.9 11.0 0.62 63.3 2.0 0.83 46.4 0.4 0.84

aData not available because scaffolder required more than 30 GB of memory or did not finish within 12 days.