Table 2.
The thirty most represented protein domains inferred from peptides, conceptually translated from individual contigs of expressed sequence tags (ESTs) for the adult stage of Trichostrongylus colubriformis.
| InterPro code | InterPro description | No. of ESTs (%)a |
|---|---|---|
| IPR001534 | Transthyretin-like | 212 (8.8) |
| IPR000504 | RNA recognition motif, RNP-1 | 202 (8.3) |
| IPR003582 | Metridin-like ShK toxin | 187 (7.6) |
| IPR001680 | WD40 repeat | 166 (6.9) |
| IPR016040 | NAD(P)-binding domain | 141 (5.8) |
| IPR001304 | C-type lectin | 136 (5.6) |
| IPR002068 | Heat shock protein Hsp20 | 132 (5.5) |
| IPR002223 | Proteinase inhibitor I2, Kunitz metazoa | 131 (5.4) |
| IPR002110 | Ankyrin | 123 (5.1) |
| IPR019781 | WD40 repeat, subgroup | 115 (4.7) |
| IPR007087 | Zinc finger, C2H2-type | 110 (4.6) |
| IPR019782 | WD40 repeat 2 | 104 (4.3) |
| IPR018249 | EF-HAND 2 | 95 (4) |
| IPR013032 | EGF-like region, conserved site | 92 (3.8) |
| IPR012677 | Nucleotide-binding, alpha-beta plait | 84 (3.5) |
| IPR011009 | Protein kinase-like | 84 (3.5) |
| IPR014044 | SCP-like extracellular | 79 (3.3) |
| IPR002130 | Peptidyl-prolyl cis-trans isomerase, cyclophilin-type | 77 (3.2) |
| IPR002423 | Chaperonin Cpn60/TCP-1 | 75 (3.1) |
| IPR001395 | Aldo/keto reductase | 69 (2.9) |
| IPR011046 | WD40 repeat-like | 68 (2.8) |
| IPR008978 | HSP20-like chaperone | 66 (2.7) |
| IPR001650 | DNA/RNA helicase, C-terminal | 65 (2.7) |
| IPR016187 | C-type lectin fold | 63 (2.6) |
| IPR001128 | Cytochrome P450 | 60 (2.5) |
| IPR009072 | Histone-fold | 60 (2.5) |
| IPR000535 | Major sperm protein | 60 (2.5) |
| IPR000242 | Protein-tyrosine phosphatase, receptor/non-receptor type | 59 (2.4) |
| IPR017986 | WD40 repeat, region | 59 (2.4) |
| IPR000557 | Calponin repeat | 58 (2.4) |
a
Percentage is calculated on the total number of InterPro domains that could be mapped in the present dataset.