TABLE 16.
Neurospora bromodomain and chromodomain proteinsa
| Protein | Locus (gene) | Match found by BLAST
|
||||
|---|---|---|---|---|---|---|
| Best match | S. cerevisiae | S. pombe | Animalb | Plantc | ||
| Bromodomain proteins | ||||||
| ScRsc1/Rsc2 | 2354.1 (pbd-1) | P. anserina; 0 | 6e-76 | 4e-68 | 2e-20 | No match |
| SpBrd1 | 2078.1 (pbd-2) | M. musculus | No match | 1e-6 | 1e-8 | No match |
| SpBdf1-like | 8809.1 (bdp-1) | D. rerio | No match | 4e-12 | 8e-14 | 2e-12 |
| ScSpt7 | 2276.1 (bdp-2) | S. pombe | 4e-38 | 1e-42 | 4e-14 | No match |
| ScBdf1 | 8423.1 (bdp-3) | S. pombe | 1e-18 | 3e-19 | 4e-18 | 2e-14 |
| Chromodomain proteins | ||||||
| DmHP1/SpSwi6 | 4017.1 (hpo) | S. pombe | No match | 3e-8 | 0.005 | No match |
| CDP-1 | 8362.1 (cdp-1) | H. sapiens | No match | 0.001 | 5e-7 | No match |
| CDP-2 | 738.1 (cdp-2) | H. sapiens | No match | No match | 0.087 | No match |
| CDP-3 | 1522.1 (cdp-3) | D. melanogaster | No match | No match | 0.001 | No match |
a
This table excludes CRF3-1 (bromodomain) and CRF6-1 and CRF7-1 (chromodomains). There are also several RIP-mutated relics of retrotransposons whose inactive POL genes match chromodomains in BLAST searches.
b
Drosophila melanogaster, Mus musculus, Homo sapiens, Danio rerio, or Caenorhabditis elegans.
c
Arabidopsis thaliana or Oryza sativa.