Table A1. Comparison of individual gene segments of four isolates of the Fraser Valley H7N3 outbreak in 2004 with full length influenza genes from GenBank showing the highest similaritya.
| Query accession no. | Isolate name | Length (bp) | BLASTN identity (%) | Accession no. and isolate name | BLASTP identity (%) | Accession no. and isolate name |
|---|---|---|---|---|---|---|
| AY650270 | A/Chicken/Canada/AVFV1/04 HA | 1,733 | 95 | AF072384 A/Chicken/NewYork/13142-5/94 (H7N3) | 97 | AAD26923 A/Chicken/NewYork/13142-5/94 (H7N3) |
| AY648287 | A/Chicken/Canada/AVFV2/04 HA | 1,754 | 96 | AF072384 A/Chicken/NewYork/13142-5/94 (H7N3) | 96 | AAD26923 A/Chicken/NewYork/13142-5/94 (H7N3) |
| AY611524 | A/Canada/444/04 (human) HA | 1,754 | 96 | AF072384 A/Chicken/NewYork/13142-5/94 (H7N3) | 96 | AAD26923 A/Chicken/NewYork/13142-5/94 (H7N3) |
| AY646078 | A/Canada/504/04 (human) HA | 1,754 | 96 | AF072384 A/Chicken/NewYork/13142-5/94 (H7N3) | 96 | AAD26923 A/Chicken/NewYork/13142-5/94 (H7N3) |
| AY650271 | A/Chicken/Canada/AVFV1/04 M | 1,027 | 98 | AF073198 A/Turkey/Colorado/13356/91(H7N3NSA) | 100 (M1) | AAB19773 A/Turkey/Minnesota/833/80 (H4N2) |
| 100 (M2) | AAQ77433 A/Chicken/Chile/176822/02 (H7N3) | |||||
| AY648288 | A/Chicken/Canada/AVFV2/04 M | 1,027 | 98 | AF073198 A/Turkey/Colorado/13356/91(H7N3NSA) | 100 (M1) | AAB19773 |
| 100 (M2) | AAQ77433 | |||||
| AY611525 | A/Canada/444/04 (human) M | 1,027 | 98 | AF073198 A/Turkey/Colorado/13356/91(H7N3NSA) | 100 (M1) | AAB19773 |
| 100 (M2) | AAQ77433 | |||||
| AY646079 | A/Canada/504/04 (human) M | 1,027 | 98 | AF073198 A/Turkey/Colorado/13356/91(H7N3NSA) | 100 (M1) | AAB19773 |
| 100 (M2) | AAQ77433 | |||||
| AY650272 | A/Chicken/Canada/AVFV1/04 NA | 1,453 | 97 | AY300951 A/blue-winged teal/TX/2/01 (H7N3) | 98 | AAP57563 A/blue-winged teal/TX/2/01 (H7N3) |
| AY648289 | A/Chicken/Canada/AVFV2/04 NA | 1,453 | 98 | AY300951 A/blue-winged teal/TX/2/01 (H7N3) | 98 | " |
| AY611526 | A/Canada/444/04 (human) NA | 1,453 | 97 | AY300951 A/blue-winged teal/TX/2/01 (H7N3) | 97 | " |
| AY646080 | A/Canada/504/04 (human) NA | 1,453 | 98 | AY300951 A/blue-winged teal/TX/2/01 (H7N3) | 98 | " |
| AY650273 | A/Chicken/Canada/AVFV1/04 NP | 1,565 | 95 | M30766 A/ruddyturnstone/NewJersey/47/85 (H4N6) | 100 | AAG17432 A/Swine/Ontario/)1911-1/99 (H4N6) |
| AY648290 | A/Chicken/Canada/AVFV2/04 NP | 1,565 | 95% | M30766 A/ruddyturnstone/NewJersey/47/85 (H4N6) | 99 | " |
| AY611527 | A/Canada/444/04 (human) NP | 1,565 | 95% | M30766 A/ruddyturnstone/NewJersey/47/85 (H4N6) | 99 | " |
| AY646081 | A/Canada/504/04 (human) NP | 1,565 | 95% | M30766 A/ruddyturnstone/NewJersey/47/85 (H4N6) | 99 | " |
| AY650274 | A/Chicken/Canada/AVFV1/04 NS | 890 | 98% | U85391 A/Turkey/Minnesota/10734/95 | 99 (NS1) | AAA43130 A/Anas acuta/Primrje/695/76 (H3N2) |
| 99 (NS2) | AAK14369 A/Brevig-Mission/1/18 (H1N1) | |||||
| AY648291 | A/Chicken/Canada/AVFV2/04 NS | 890 | 98 | U85391 A/Turkey/Minnesota/10734/95 | 99 (NS1) | AAA43130 |
| 99 (NS2) | AAK14369 | |||||
| AY611528 | A/Canada/444/04 (human) NS | 890 | 98 | U85391 A/Turkey/Minnesota/10734/95 | 99 (NS1) | AAA43130 |
| 99 (NS2) | AAK14369 | |||||
| AY646082 | A/Canada/504/04 (human) NS | 890 | 98 | U85391 A/Turkey/Minnesota/10734/95 | 99 (NS1) | AAA43130 |
| AY650275 | A/Chicken/Canada/AVFV1/04 PA | 2,230 | 94 | AF285890 A/Swine/Ontario/01011-1/99 (H4N6) | 98 | CAB56290 A/Mallard.NewYork/6750/78 |
| AY648292 | A/Chicken/Canada/AVFV2/04 PA | 2,233 | 95 | AF285890 A/Swine/Ontario/01011-1/99 (H4N6) | 98 | CAB56290 A/Mallard.NewYork/6750/78 |
| AY616764 | A/Canada/444/04 (human) PA | 2,233 | 95 | AF285890 A/Swine/Ontario/01011-1/99 (H4N6) | 98 | CAB56290 A/Mallard.NewYork/6750/78 |
| AY646083 | A/Canada/504/04 (human) PA | 2,233 | 95 | AF285890 A/Swine/Ontario/01011-1/99 (H4N6) | 98 | CAB56290 A/Mallard.NewYork/6750/78 |
| AY653039 | A/Chicken/Canada/AVFV1/04 PB1 | 2,341 | 95 | M25925 A/Turkey/Minnesota/833/80 (H4N2) | 99 | AAG17436 A/Swine/Ontarion/01911-1/99 (H4N6) |
| AY648293 | A/Chicken/Canada/AVFV2/04 PB1 | 2,341 | 95 | M25925 A/Turkey/Minnesota/833/80 (H4N2) | 99 | AAG17436 A/Swine/Ontarion/01911-1/99 (H4N6) |
| AY616765 | A/Canada/444/04 (human) PB1 | 2,341 | 95 | M25925 A/Turkey/Minnesota/833/80 (H4N2) | 98 | AAG17436 A/Swine/Ontarion/01911-1/99 (H4N6) |
| AY646084 | A/Canada/504/04 (human) PB1 | 2,341 | 95 | M25925 A/Turkey/Minnesota/833/80 (H4N2) | 99 | AAG17436 A/Swine/Ontarion/01911-1/99 (H4N6) |
| AY650276 | A/Chicken/Canada/AVFV1/04 PB2 | 2,341 | 93 | M73522 A/Seal/Massachusetts/133/82 (H4N5) | 99 | AAR04359 A/Chicken/Netherlands/1/03 (H7N7) |
| AY648294 | A/Chicken/Canada/AVFV2/04 PB2 | 2,341 | 93 | M73522 A/Seal/Massachusetts/133/82 (H4N5) | 99 | AAR04359 A/Chicken/Netherlands/1/03 (H7N7) |
| AY616766 | A/Canada/444/04 (human) PB2 | 2,341 | 93 | M73522 A/Seal/Massachusetts/133/82 (H4N5) | 99 | AAR04359 A/Chicken/Netherlands/1/03 (H7N7) |
| AY646085 | A/Canada/504/04 (human) PB2 | 2,341 | 93 | M73522 A/Seal/Massachusetts/133/82 (H4N5) | 99 | AAR04359 A/Chicken/Netherlands/1/03 (H7N7) |
aQuery accession no., isolate name and length (bp); GenBank accession no., isolate name, and nucleotide length for each gene segment, respectively; BLASTN identity, percentage of identical nucleotides as assigned by BLASTN; accession no., GenBank nucleotide accession no., and isolate name; BLASTP identity, percentage of identical nucleotides as assigned by BLASTP; accession no., GenBank protein accession no., and isolate name.