Table 5.
Performance of IsoInfer When the Exon-Intron Boundary Information Is Extracted from the Exon Junctions Predicted by TopHat
| Known isoforms | mRNAs | Union | |
|---|---|---|---|
| Precision | 0.240 | 0.362 | 0.378 |
| Effective sensitivity | 0.496 | 0.532 | 0.508 |
These results are all on the mouse brain tissue. The TSS-PAS pair information is extracted from the known mouse isoforms and/or mRNAs, depending on the benchmark. Again, “Union” means that the TSS-PAS pair information is extracted from both known mouse isoforms and mRNAs, and the benchmark is the union of the known mouse isoforms and mRNAs.