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. Author manuscript; available in PMC: 2012 Jan 15.
Published in final edited form as: Clin Cancer Res. 2010 Nov 8;17(2):236–246. doi: 10.1158/1078-0432.CCR-10-1369

Table 2.

216 probes [identified by gene name] differentially expressed between histologically normal breast epithelium of breasts with ER+ compared to ER- cancers §

Gene ER+:ER-Fold ‡ Gene ER+:ER-Fold ‡ Gene ER+:ER-Fold ‡ Gene ER+:ER-Fold ‡
UGT2B28 15.65 BUB3 2.28 CUL4B 2.08 ANPEP 0.40
CXCL13 11.76 SFRS1 2.28 ADCY1 2.08 IGHG1 0.40
GRIA2 5.52 CTSO 2.27 ATP9A 2.07 PTGDS 0.40
TNFSF11 4.41 SAV1 2.27 ZNF451 2.07 SAT1 0.40
TFPI2 4.22 ALOX15B 2.27 YWHAZ 2.07 KRT23 0.40
EREG 4.20 FUSIP1 2.26 WAC 2.07 COL6A1 0.39
SLC26A3 4.18 SHQ1 2.26 TM9SF2 2.04 S100A4 0.39
TSPAN8 4.13 CCDC47 2.25 CD74 0.49 RARRES1 0.39
CYP24A1 4.11 SERHL2 2.24 LSR 0.49 DEFB1 0.39
CPB1 4.06 TCP1 2.24 FKBP11 0.48 CD14 0.38
NAIP 4.05 COIL 2.23 C1QA 0.48 S100A11 0.38
MYBPC1 3.92 NA 2.23 SNRPD2 0.48 PTGDS 0.38
STC1 3.87 PI15 2.22 IFITM1 0.47 CX3CL1 0.37
BMP5 3.71 LONP2 2.21 S100A11 0.47 GSTA1 0.37
GPR144 3.49 ZBTB44 2.21 BCL3 0.47 SH3BGRL3 0.37
CLCA2 3.41 XRCC5 2.21 STAG2 0.47 PSPH 0.37
HPGD 3.04 FYCO1 2.20 RPL13 0.47 TGFB2 0.37
NEDD4L 2.94 ZFC3H1 2.20 GMFG 0.47 MAF 0.36
SERHL 2.93 ERBB4 2.19 APOC1 0.47 PLTP 0.36
HMGCS2 2.90 GOLGA8B 2.19 GBP1 0.47 G0S2 0.35
STK32B 2.86 FRY 2.19 CITED2 0.47 HSPG2 0.35
TRIB2 2.81 GATA3 2.19 LTB 0.46 PI3 0.35
BAT1 2.80 ERMAP 2.18 TNFAIP2 0.46 RARRES1 0.34
C14ORF132 2.63 NSF 2.18 PDZK1IP1 0.46 RPS26 0.33
ZNF167 2.60 SIDT1 2.17 H2AFX 0.46 S100A6 0.33
GYG2 2.59 RAB3GAP2 2.17 ATP5E 0.46 NA 0.33
KCTD7 2.55 GFRA1 2.16 IGKC 0.46 NOV 0.32
PNMAL1 2.54 GPRC5B 2.16 CRABP2 0.45 VGLL1 0.31
TTLL5 2.52 ISG20L2 2.16 NA 0.45 THBS1 0.31
PDZK1 2.52 BLCAP 2.16 CIITA 0.45 IGHA2 0.30
DIO2 2.50 GNB1 2.16 TRBC1 0.45 CCL19 0.30
GPLD1 2.50 ABAT 2.15 TRAF3IP3 0.45 IGKC 0.30
LYST 2.48 STC2 2.15 CX3CL1 0.45 LOC100293440 0.29
HSP90AB1 2.45 IL20RA 2.15 RPL36 0.45 IGL@ 0.29
FGFR3 2.44 TTC19 2.15 CD24 0.45 IGKC 0.29
LANCL1 2.43 TCF7L2 2.15 SPP1 0.44 CCL5 0.28
NA 2.41 CEP68 2.15 CCL8 0.44 IGL@ 0.27
MAP4K5 2.41 CPD 2.14 LTF 0.44 UBD 0.27
AKR1D1 2.40 MME 2.14 FOSL2 0.44 NA 0.25
PEX11B 2.40 YTHDF1 2.13 LOC91316 0.44 IGL@ 0.25
SERINC3 2.36 KLF7 2.13 C10ORF81 0.43 MUC7 0.22
FAM188A 2.33 AHNAK 2.12 FABP4 0.43 LOC100291464 0.21
PSMB1 2.33 NA 2.12 JUNB 0.43 LYZ 0.21
TBC1D8B 2.32 MTUS1 2.12 FABP7 0.43 MGC29506 0.19
TRIM37 2.32 ADRA2A 2.11 RPL28 0.43 S100A8 0.19
HEY1 2.32 TRIM36 2.11 CXCL14 0.42 IGL@ 0.18
MSMB 2.31 PTPRZ1 2.11 LIF 0.41 CCL2 0.18
RAB3GAP1 2.31 MCCC2 2.11 ID2 0.41 S100A9 0.18
NPY2R 2.30 ESR1 2.10 C4BPA 0.41 CD52 0.17
AXL 2.30 ITPR1 2.10 TFEB 0.41 IGKC 0.17
SPRY1 2.30 ADAM12 2.10 AIF1 0.40 IGLL3 0.13
ABLIM1 2.30 PIP4K2A 2.09 CCL3 0.40 IGHM 0.11
STC1 2.30 RYBP 2.09 TOP2A 0.40 IGL@ 0.11
RAB28 2.29 POGK 2.08 STAB1 0.40 CSN2 0.09
§

Probability scores calculated in BADGE ranged from 4.45E-8 to 1.81E-2

‡

Fold change calculated in BADGE (see methods)

NA, not available; @, cannot distinguish between multiple gene family members