Table 6.
ML bootstrap-based (boot.) and aLRT-based confidence values derived from different character supermatrices.
| (1) | (1') | (2) | (3) | |||||
|---|---|---|---|---|---|---|---|---|
| boot. | aLRT | aLRT | boot. | aLRT | boot. | aLRT | ||
| initial | 0.60 | 0.389 | 1.000 | 0.92 | 0.919 | 0.07 | 0.000 | |
| BMGE | (BLOSUM30) | 0.65 | 0.673 | 0.999 | 0.86 | 0.864 | 0.06 | 0.000 |
| BMGE | (BLOSUM62) | 0.78 | 0.725 | 1.000 | 0.42 | 0.296 | 0.29 | 0.000 |
| BMGE | (BLOSUM95) | 0.83 | 0.826 | 0.999 | 0.21 | 0.000 | 0.46 | 0.711 |
| Gblocks | (relaxed) | 0.64 | 0.311 | 0.999 | 0.80 | 0.895 | 0.10 | 0.000 |
| trimAl | (strictplus) | 0.59 | 0.379 | 0.999 | 0.91 | 0.973 | 0.03 | 0.000 |
| trimAl | (automated1) | 0.74 | 0.686 | 1.000 | 0.93 | 0.955 | 0.05 | 0.000 |
| Noisy | 0.81 | 0.936 | 1.000 | 0.77 | 0.776 | 0.22 | 0.000 | |
Nodes (1), (1'), (2) and (3) are indicated on the phylogenetic trees in Figure 6. Nodes (1) and (1') correspond to the monophyly of Unikonts. Paraphyly and monophyly of Archaeplastida correspond to nodes (2) and (3), respectively. For each column, the best (i.e. higher) confidence value is written in boldface characters.