Table 1.
Benchmarks for three pedigree structures. For the haplotype data, 20 haplotypes were generated consisting of 50 marker loci and for the genotype data 50 marker loci were generated
| Pedigree ID |
Number of generations |
Number of individuals |
Number of founders |
Number of consanguin- ity loops |
Haplotype (seconds) |
Genotype (seconds) |
|---|---|---|---|---|---|---|
| 1 | 3 | 16 | 4 | 0 | 0.73 | 0.75 |
| 2 | 7 | 52 | 11 | 11 | 2.16 | 2.31 |
| 3 | 6 | 2,827 | 472 | 0 | 221.06 | 231.72 |
For each benchmark 1,000 replicates were generated.