Table 3.
Haplotypes with longer than expected homozygosity (EHH test) for DCT and TYRP1.
| Locus | Core SNPs IDs |
Chr positiona | Core haplotype | frequencyc | popd | ||
|---|---|---|---|---|---|---|---|
| CEU | ASI | YRI | |||||
| DCT | rs9516418 | Chr13:93909510 | TCA | 5% | 18% | 0% | ASI |
| rs9584234 | Chr13:93909660 | (101)b | |||||
| rs12877248 | Chr13:9390983 | ||||||
| TYRP1 | rs10809814 | Chr9:12649098 | AA | 5% | 71% | 19% | ASI |
| rs4741242 | Chr9:12649691 | (10)b | |||||
| TYRP1 | rs10960751 | Chr9:12665264 | TGA | 0% | 0% | 20% | YRI |
| rs10960752 | Chr9:12665284 | (001)b | |||||
| rs932761 | Chr9:12665380 | ||||||
a Coordinates from HapMap Data Rel. 21a/PhaseII, Jan07 on NCBI B35 assembly, dbSNP b125.
b Between brackets, ancestral/derived coding of haplotypes; 0: ancestral, 1: derived
c CEU: HapMap North European Caucasians; ASI: HapMap Chinese+Japanese; YRI: HapMap Yorubas.
d Population in which the core haplotype shows longer than expected EHH at a significance value of 0.05 (see Methods).