TABLE 2.
Major virulence-related genes in strains Newman, MW2, and N315 and their locationsa
| Type | Strain
|
||||||||
|---|---|---|---|---|---|---|---|---|---|
| Newman
|
MW2
|
N315
|
|||||||
| Locus | Gene | Island | Locus | Gene | Island | Locus | Gene | Island | |
| Toxins | |||||||||
| Enterotoxin | NWMN1883 | sea | φNM3 | MW1889 | sea | φSa3mw | SA1761 | sep | φSa3n |
| MW1938 | sek2 | φSa3mw | SA1817 | sec3 | νSa4 | ||||
| MW1937 | seq | φSa3mw | SA1816 | sel | νSa4 | ||||
| MW0759 | sec4 | νSa3 | SA1642 | seg | νSaβ | ||||
| MW0760 | sel2 | νSa3 | SA1643 | sen | νSaβ | ||||
| MW0051 | seh | SA1646 | sei | νSaβ | |||||
| SA1647 | sem | νSaβ | |||||||
| SA1648 | seo | νSaβ | |||||||
| Exotoxin | NWMN0388 | set1nm | νSaα | MW0382 | set16 | νSaα | SA0382 | set6 | νSaα |
| NWMN0389 | set2nm | νSaα | MW0383 | set17 | νSaα | SA0383 | set7 | νSaα | |
| NWMN0390 | set3nm | νSaα | MW0384 | set18 | νSaα | SA0384 | set8 | νSaα | |
| NWMN0391 | set4nm | νSaα | MW0385 | set19 | νSaα | SA0385 | set9 | νSaα | |
| NWMN0392 | set5nm | νSaα | MW0386 | set20 | νSaα | SA0386 | set10 | νSaα | |
| NWMN0393 | set6nm | νSaα | MW0387 | set21 | νSaα | SA0387 | set11 | νSaα | |
| NWMN0394 | set7nm | νSaα | MW0388 | set22 | νSaα | SA0388 | set12 | νSaα | |
| NWMN0395 | set8nm | νSaα | MW0389 | set23 | νSaα | SA0389 | set13 | νSaα | |
| NWMN0396 | set9nm | νSaα | MW0390 | set24 | νSaα | SA0390 | set14 | νSaα | |
| NWMN0397 | set10nm | νSaα | MW0391 | set25 | νSaα | SA0393 | set15 | νSaα | |
| NWMN0400 | set11nm | νSaα | MW0394 | set26 | νSaα | ||||
| Toxic shock syndrome toxin | SA1819 | tst | νSa4 | ||||||
| Exfoliative toxin | NWMN1082 | eta | νSaγ | MW1054 | eta | νSaγ | SA1016 | eta | νSaγ |
| Alpha-hemolysin | NWMN1073 | hly | νSaγ | MW0955 | hly | νSaγ | SA1007 | hly | νSaγ |
| Beta-hemolysin | Truncated | hlb | φNM3 | Truncated | hlb | φSa3mw | Truncated | hlb | φSa3n |
| Delta-hemolysin | NWMN1942 | hld | MW1959 | hld | SAS065 | hld | |||
| Gamma-hemolysin | NWMN2318 | hlgA | MW2342 | hlgA | SA2207 | hlgA | |||
| component | NWMN2319 | hlgC | MW2343 | hlgC | SA2208 | hlgC | |||
| NWMN2320 | hlgB | MW2344 | hlgB | SA2209 | hlgB | ||||
| LukDE leukocidin | NWMN1717 | lukD | νSaβ | MW1767 | lukD | νSaβ | SA1637 | lukD | νSaβ |
| component | NWMN1718 | lukE | νSaβ | MW1768 | lukE | νSaβ | SA1638 | lukE | νSaβ |
| Panton-Valentine leukcidin | MW1379 | lukS-PV | φSa2mw | ||||||
| component | MW1378 | lukF-PV | φSa2mw | ||||||
| Exoenzymes | |||||||||
| Serine protease | NWMN1706 | splA | νSaβ | MW1755 | splA | νSaβ | SA1631 | splA | νSaβ |
| NWMN1705 | splB | νSaβ | MW1754 | splB | νSaβ | SA1630 | splB | νSaβ | |
| NWMN1704 | splC | νSaβ | MW1753 | splC | νSaβ | SA1629 | splC | νSaβ | |
| NWMN1703 | splD | νSaβ | MW1752 | splF | νSaβ | SA1628 | splD | νSaβ | |
| NWMN1702 | splE | νSaβ | SA1627 | splF | νSaβ | ||||
| NWMN1701 | splF | νSaβ | |||||||
| NWMN0892 | htrA | MW0903 | htrA | SA0879 | htrA | ||||
| Serine V8 protease | NWMN0918 | sspA | MW0932 | sspA | SA0901 | sspA | |||
| Cysteine protease | NWMN0917 | sspB | MW0931 | sspB | SA0900 | sspB | |||
| NWMN0916 | sspC | MW0930 | sspC | SA0899 | sspC | ||||
| Lipase | Truncatedg | geh | φNM4 | MW0297 | geh | SA0309 | geh | ||
| NWMN2569 | lip | MW2590 | lip | SA2463 | lip | ||||
| Lipase/esterase | NWMN0624 | lipA | MW0617 | lipA | SA0610 | lipA | |||
| Hyaluronate lyase | NWMN2106 | hysA | MW2129 | hysA | SA2003 | hysA | |||
| Thermonuclease | NWMN1236 | nuc | MW1211 | nuc | SA1160 | nuc | |||
| Immunomodulators | |||||||||
| Staphylokinase | NWMN1880 | sak | φNM3 | MW1885 | sak | φSa3mw | SA1758 | sak | φSa3n |
| Chemotaxis inhibiting protein | NWMN1877 | chp | φNM3 | SA1755 | chp | φSa3n | |||
| Complement inhibitor | NWMN1876 | scn | φNM3 | MW1884 | scn | φSa3mw | SA1754 | scn | φSa3n |
| Immunoglobulin G binding protein A | NWMN0055 | spa | MW0084 | spa | SA0107 | spa | |||
| Immunoglobulin G binding protein sbi | NWMN2317 | sbi | MW2341 | sbi | SA2206 | sbi | |||
| Adhesins | |||||||||
| Collagen-binding protein | MW2612 | cna | |||||||
| Fibronectin-binding protein | NWMN2399 | fnbAb | MW2421 | fnbA | SA2291 | fnbA | |||
| NWMN2397 | fnbBb | MW2420 | fnbB | SA2290 | fnbB | ||||
| SD-rich fibrinogen-binding | NWMN0756 | clfA | MW0764 | clfA | SA0742 | clfA | |||
| protein | NWMN2529 | clfB | MW2551 | clfB | SA2423 | clfB | |||
| NWMN0523 | sdrC | MW0516 | sdrC | SA0519 | sdrC | ||||
| NWMN0524 | sdrD | MW0517 | sdrD | SA0520 | sdrD | ||||
| NWMN0525 | sdrE | MW0518 | sdrE | SA0521 | sdrE | ||||
| NWMN1940 | sdrH | MW1956 | sdrH | SA1839 | sdrH | ||||
| Elastin-binding protein | NWMN1389 | ebpS | MW1369 | ebpS | SA1312 | ebpS | |||
| Other virulence-related phage proteinsc | |||||||||
| Functionally unknown proteinA | NWMN0270d | φNM4 | |||||||
| Functionally unknown proteinB | NWMN0273 | φNM4 | |||||||
| Functionally unknown proteinC | NWMN0280 | φNM4 | MW1420 | φSa2mw | SA1786 | φSa3n | |||
| Functionally unknown protein | NWMN0284 | φNM4 | |||||||
| Functionally unknown protein | NWMN0995 | φNM2 | |||||||
| Functionally unknown proteinB | NWMN1001 | φNM2 | |||||||
| Functionally unknown proteinC | NWMN1008 | φNM2 | |||||||
| Functionally unknown proteinC | NWMN1800 | φNM1 | |||||||
| Functionally unknown proteinB | NWMN1807 | φNM1 | |||||||
| Functionally unknown proteinA | NWMN1809e | φNM1 | |||||||
| Functionally unknown proteinC | NWMN1905f | φNM3 | |||||||
| Functionally unknown protein | NWMN1912 | φNM3 | MW1924 | φSa3mw | SA1795 | φSa3n | |||
Among virulence-related genes shown as red bars in Fig. 1, those involved in capsular polysaccharide biosynthesis and iron uptake are not listed.
The C terminus, including cell wall anchoring signal, is truncated, and therefore the product is nonfunctional (11).
Identified by bursa aurealis mutagenesis of strain Newman followed by nematode killing assay employing the mutants (4). Unknown proteins with the same superscript capital letter are paralogs.
Located between NWMN0270 and NWMN0271.
Located between NWMN1809 and NWMN1810.
Located between NWMN1905 and NWMN1906.
Truncated due to insertion of the indicated prophage.