TABLE 2.
Comparison of genomic features and amino acid identities between the predicted proteins of HRV-C 024 and the corresponding proteins of HRV-C 025 and HRV-C 026 and of other members of Picornaviridae
| Picornavirus species and straina | Genome features
|
Pairwise amino acid identity (%)
|
|||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Size (no. of bases) | G+C content | VP4 | VP2 | VP3 | VP1 | 2A | 2B | 2C | 3A | 3B | 3C | 3D | |
| HRV-A (HRV89) | 7,152 | 0.39 | 62 | 63 | 44 | 45 | 56 | 53 | 49 | 42 | 45 | 46 | 57 |
| HRV-B (HRV14) | 7,212 | 0.41 | 50 | 61 | 40 | 36 | 36 | 51 | 47 | 30 | 47 | 48 | 62 |
| HRV-C 024 | 7,099 | 0.43 | |||||||||||
| HRV-C 025 | 7,114 | 0.42 | 82 | 79 | 65 | 60 | 69 | 66 | 70 | 57 | 45 | 73 | 69 |
| HRV-C 026 | 7,086 | 0.43 | 76 | 81 | 64 | 65 | 66 | 58 | 66 | 64 | 59 | 69 | 68 |
| HEV-A (EV71) | 7,410 | 0.48 | 55 | 49 | 40 | 37 | 41 | 41 | 47 | 31 | 54 | 45 | 57 |
| HEV-B (EV73) | 7,411 | 0.48 | 62 | 53 | 46 | 40 | 39 | 50 | 45 | 33 | 54 | 45 | 58 |
| HEV-C (CAV21) | 7,401 | 0.45 | 60 | 54 | 43 | 41 | 40 | 50 | 43 | 29 | 40 | 43 | 57 |
| HEV-D (EV70) | 7,390 | 0.43 | 67 | 49 | 39 | 37 | 43 | 48 | 45 | 31 | 54 | 49 | 59 |
| Poliovirus (PV1) | 7,441 | 0.46 | 64 | 51 | 43 | 40 | 42 | 50 | 46 | 26 | 40 | 44 | 57 |
HRV89, GenBank accession no. A10937; HRV14, GenBank accession no. NC_001490; EV71, GenBank accession no. DQ452074; EV73, GenBank accession no. AF241359; CAV21 (human coxsackievirus A21), GenBank accession no. NC_001428; EV70, GenBank accession no. NC_001430; PV1 (human poliovirus strain Sabin 1), GenBank accession no. V01150.