Abstract
The backbone resonance assignments have been completed for the apo (1H and 15N) and calcium-loaded (1H, 15N, and 13C) regulatory N-domain of chicken skeletal troponin-C (1-90), using multidimensional homonuclear and heteronuclear NMR spectroscopy. The chemical-shift information, along with detailed NOE analysis and 3JHNH alpha coupling constants, permitted the determination and quantification of the Ca(2+)-induced secondary structural change in the N-domain of TnC. For both structures, 5 helices and 2 short beta-strands were found, as was observed in the apo N-domain of the crystal structure of whole TnC (Herzberg O, James MNG, 1988, J Mol Biol 203:761-779). The NMR solution structure of the apo form is indistinguishable from the crystal structure, whereas some structural differences are evident when comparing the 2Ca2+ state solution structure with the apo one. The major conformational change observed is the straightening of helix-B upon Ca2+ binding. The possible importance and role of this conformational change is explored. Previous CD studies on the regulatory domain of TnC showed a significant Ca(2+)-induced increase in negative ellipticity, suggesting a significant increase in helical content upon Ca2+ binding. The present study shows that there is virtually no change in alpha-helical content associated with the transition from apo to the 2Ca2+ state of the N-domain of TnC. Therefore, the Ca(2+)-induced increase in ellipticity observed by CD does not relate to a change in helical content, but more likely to changes in spatial orientation of helices.
Full Text
The Full Text of this article is available as a PDF (3.4 MB).
Selected References
These references are in PubMed. This may not be the complete list of references from this article.
- Akke M., Drakenberg T., Chazin W. J. Three-dimensional solution structure of Ca(2+)-loaded porcine calbindin D9k determined by nuclear magnetic resonance spectroscopy. Biochemistry. 1992 Feb 4;31(4):1011–1020. doi: 10.1021/bi00119a009. [DOI] [PubMed] [Google Scholar]
- Carew E. B., Leavis P. C., Stanley H. E., Gergely J. A laser Raman spectroscopic study of Ca2+ binding to troponin C. Biophys J. 1980 May;30(2):351–358. doi: 10.1016/S0006-3495(80)85099-5. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chen Y. H., Yang J. T., Chau K. H. Determination of the helix and beta form of proteins in aqueous solution by circular dichroism. Biochemistry. 1974 Jul 30;13(16):3350–3359. doi: 10.1021/bi00713a027. [DOI] [PubMed] [Google Scholar]
- Clore G. M., Gronenborn A. M. Structures of larger proteins in solution: three- and four-dimensional heteronuclear NMR spectroscopy. Science. 1991 Jun 7;252(5011):1390–1399. doi: 10.1126/science.2047852. [DOI] [PubMed] [Google Scholar]
- Evans J. S., Levine B. A., Leavis P. C., Gergely J., Grabarek Z., Drabikowski W. Proton magnetic resonance studies on proteolytic fragments of troponin-C. Structural homology with the native molecule. Biochim Biophys Acta. 1980 May 29;623(1):10–20. doi: 10.1016/0005-2795(80)90003-3. [DOI] [PubMed] [Google Scholar]
- Farah C. S., Miyamoto C. A., Ramos C. H., da Silva A. C., Quaggio R. B., Fujimori K., Smillie L. B., Reinach F. C. Structural and regulatory functions of the NH2- and COOH-terminal regions of skeletal muscle troponin I. J Biol Chem. 1994 Feb 18;269(7):5230–5240. [PubMed] [Google Scholar]
- Findlay W. A., Sykes B. D. 1H-NMR resonance assignments, secondary structure, and global fold of the TR1C fragment of turkey skeletal troponin C in the calcium-free state. Biochemistry. 1993 Apr 6;32(13):3461–3467. doi: 10.1021/bi00064a033. [DOI] [PubMed] [Google Scholar]
- Findlay W. A., Sönnichsen F. D., Sykes B. D. Solution structure of the TR1C fragment of skeletal muscle troponin-C. J Biol Chem. 1994 Mar 4;269(9):6773–6778. doi: 10.2210/pdb1trf/pdb. [DOI] [PubMed] [Google Scholar]
- Golosinska K., Pearlstone J. R., Borgford T., Oikawa K., Kay C. M., Carpenter M. R., Smillie L. B. Determination of and corrections to sequences of turkey and chicken troponins-C. Effects of Thr-130 to Ile mutation on Ca2+ affinity. J Biol Chem. 1991 Aug 25;266(24):15797–15809. [PubMed] [Google Scholar]
- Grabarek Z., Tao T., Gergely J. Molecular mechanism of troponin-C function. J Muscle Res Cell Motil. 1992 Aug;13(4):383–393. doi: 10.1007/BF01738034. [DOI] [PubMed] [Google Scholar]
- Herzberg O., James M. N. Refined crystal structure of troponin C from turkey skeletal muscle at 2.0 A resolution. J Mol Biol. 1988 Oct 5;203(3):761–779. doi: 10.1016/0022-2836(88)90208-2. [DOI] [PubMed] [Google Scholar]
- Herzberg O., Moult J., James M. N. A model for the Ca2+-induced conformational transition of troponin C. A trigger for muscle contraction. J Biol Chem. 1986 Feb 25;261(6):2638–2644. [PubMed] [Google Scholar]
- Hincke M. T., McCubbin W. D., Kay C. M. Calcium-binding properties of cardiac and skeletal troponin C as determined by circular dichroism and ultraviolet difference spectroscopy. Can J Biochem. 1978 Jun;56(6):384–395. doi: 10.1139/o78-061. [DOI] [PubMed] [Google Scholar]
- Ho S. N., Hunt H. D., Horton R. M., Pullen J. K., Pease L. R. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene. 1989 Apr 15;77(1):51–59. doi: 10.1016/0378-1119(89)90358-2. [DOI] [PubMed] [Google Scholar]
- Ikura M., Clore G. M., Gronenborn A. M., Zhu G., Klee C. B., Bax A. Solution structure of a calmodulin-target peptide complex by multidimensional NMR. Science. 1992 May 1;256(5057):632–638. doi: 10.1126/science.1585175. [DOI] [PubMed] [Google Scholar]
- Ikura M., Kay L. E., Bax A. A novel approach for sequential assignment of 1H, 13C, and 15N spectra of proteins: heteronuclear triple-resonance three-dimensional NMR spectroscopy. Application to calmodulin. Biochemistry. 1990 May 15;29(19):4659–4667. doi: 10.1021/bi00471a022. [DOI] [PubMed] [Google Scholar]
- Ikura M., Spera S., Barbato G., Kay L. E., Krinks M., Bax A. Secondary structure and side-chain 1H and 13C resonance assignments of calmodulin in solution by heteronuclear multidimensional NMR spectroscopy. Biochemistry. 1991 Sep 24;30(38):9216–9228. doi: 10.1021/bi00102a013. [DOI] [PubMed] [Google Scholar]
- Johnson J. D., Potter J. D. Detection of two classes of Ca2+ binding sites in troponin C with circular dichroism and tyrosine fluorescence. J Biol Chem. 1978 Jun 10;253(11):3775–3777. [PubMed] [Google Scholar]
- Krudy G. A., Brito R. M., Putkey J. A., Rosevear P. R. Conformational changes in the metal-binding sites of cardiac troponin C induced by calcium binding. Biochemistry. 1992 Feb 18;31(6):1595–1602. doi: 10.1021/bi00121a003. [DOI] [PubMed] [Google Scholar]
- Leavis P. C., Nagy B., Lehrer S. S., Bialkowska H., Gergely J. Terbium binding to troponin C: binding stoichiometry and structural changes induced in the protein. Arch Biochem Biophys. 1980 Mar;200(1):17–21. doi: 10.1016/0003-9861(80)90324-0. [DOI] [PubMed] [Google Scholar]
- Leavis P. C., Rosenfeld S. S., Gergely J., Grabarek Z., Drabikowski W. Proteolytic fragments of troponin C. Localization of high and low affinity Ca2+ binding sites and interactions with troponin I and troponin T. J Biol Chem. 1978 Aug 10;253(15):5452–5459. [PubMed] [Google Scholar]
- Levine B. A., Coffman D. M., Thornton J. M. Calcium binding by troponin-C. A proton magnetic resonance study. J Mol Biol. 1977 Oct 5;115(4):743–760. doi: 10.1016/0022-2836(77)90113-9. [DOI] [PubMed] [Google Scholar]
- Levine B. A., Thornton J. M., Fernandes R., Kelly C. M., Mercola D. Comparison of the calcium- and magnesium-induced structural changes of troponin--C. A proton magnetic resonance study. Biochim Biophys Acta. 1978 Jul 21;535(1):11–24. doi: 10.1016/0005-2795(78)90028-4. [DOI] [PubMed] [Google Scholar]
- Li M. X., Chandra M., Pearlstone J. R., Racher K. I., Trigo-Gonzalez G., Borgford T., Kay C. M., Smillie L. B. Properties of isolated recombinant N and C domains of chicken troponin C. Biochemistry. 1994 Feb 1;33(4):917–925. doi: 10.1021/bi00170a010. [DOI] [PubMed] [Google Scholar]
- Manning M. C. Underlying assumptions in the estimation of secondary structure content in proteins by circular dichroism spectroscopy--a critical review. J Pharm Biomed Anal. 1989;7(10):1103–1119. doi: 10.1016/0731-7085(89)80049-4. [DOI] [PubMed] [Google Scholar]
- Marion D., Driscoll P. C., Kay L. E., Wingfield P. T., Bax A., Gronenborn A. M., Clore G. M. Overcoming the overlap problem in the assignment of 1H NMR spectra of larger proteins by use of three-dimensional heteronuclear 1H-15N Hartmann-Hahn-multiple quantum coherence and nuclear Overhauser-multiple quantum coherence spectroscopy: application to interleukin 1 beta. Biochemistry. 1989 Jul 25;28(15):6150–6156. doi: 10.1021/bi00441a004. [DOI] [PubMed] [Google Scholar]
- Marsden B. J., Shaw G. S., Sykes B. D. Calcium binding proteins. Elucidating the contributions to calcium affinity from an analysis of species variants and peptide fragments. Biochem Cell Biol. 1990 Mar;68(3):587–601. doi: 10.1139/o90-084. [DOI] [PubMed] [Google Scholar]
- McPhalen C. A., Strynadka N. C., James M. N. Calcium-binding sites in proteins: a structural perspective. Adv Protein Chem. 1991;42:77–144. doi: 10.1016/s0065-3233(08)60535-5. [DOI] [PubMed] [Google Scholar]
- Nagy B., Gergely J. Extent and localization of conformational changes in troponin C caused by calcium binding. Spectral studies in the presence and absence of 6 M urea. J Biol Chem. 1979 Dec 25;254(24):12732–12737. [PubMed] [Google Scholar]
- Pardi A., Billeter M., Wüthrich K. Calibration of the angular dependence of the amide proton-C alpha proton coupling constants, 3JHN alpha, in a globular protein. Use of 3JHN alpha for identification of helical secondary structure. J Mol Biol. 1984 Dec 15;180(3):741–751. doi: 10.1016/0022-2836(84)90035-4. [DOI] [PubMed] [Google Scholar]
- Rance M., Sørensen O. W., Bodenhausen G., Wagner G., Ernst R. R., Wüthrich K. Improved spectral resolution in cosy 1H NMR spectra of proteins via double quantum filtering. Biochem Biophys Res Commun. 1983 Dec 16;117(2):479–485. doi: 10.1016/0006-291x(83)91225-1. [DOI] [PubMed] [Google Scholar]
- Richards F. M., Kundrot C. E. Identification of structural motifs from protein coordinate data: secondary structure and first-level supersecondary structure. Proteins. 1988;3(2):71–84. doi: 10.1002/prot.340030202. [DOI] [PubMed] [Google Scholar]
- Satyshur K. A., Rao S. T., Pyzalska D., Drendel W., Greaser M., Sundaralingam M. Refined structure of chicken skeletal muscle troponin C in the two-calcium state at 2-A resolution. J Biol Chem. 1988 Feb 5;263(4):1628–1647. [PubMed] [Google Scholar]
- Seamon K. B., Hartshorne D. J., Bothner-By A. A. Ca2+ and Mg2+ dependent conformations of troponin C as determined by 1H and 19F nuclear magnetic resonance. Biochemistry. 1977 Sep 6;16(18):4039–4046. doi: 10.1021/bi00637a016. [DOI] [PubMed] [Google Scholar]
- Strynadka N. C., James M. N. Crystal structures of the helix-loop-helix calcium-binding proteins. Annu Rev Biochem. 1989;58:951–998. doi: 10.1146/annurev.bi.58.070189.004511. [DOI] [PubMed] [Google Scholar]
- Tsuda S., Hasegawa Y., Yoshida M., Yagi K., Hikichi K. Nuclear magnetic resonance study on rabbit skeletal troponin C: calcium-induced conformational change. Biochemistry. 1988 May 31;27(11):4120–4126. doi: 10.1021/bi00411a032. [DOI] [PubMed] [Google Scholar]
- Tsuda S., Ogura K., Hasegawa Y., Yagi K., Hikichi K. 1H NMR study of rabbit skeletal muscle troponin C: Mg2(+)-induced conformational change. Biochemistry. 1990 May 22;29(20):4951–4958. doi: 10.1021/bi00472a027. [DOI] [PubMed] [Google Scholar]
- Wishart D. S., Sykes B. D. Chemical shifts as a tool for structure determination. Methods Enzymol. 1994;239:363–392. doi: 10.1016/s0076-6879(94)39014-2. [DOI] [PubMed] [Google Scholar]
- Wishart D. S., Sykes B. D. The 13C chemical-shift index: a simple method for the identification of protein secondary structure using 13C chemical-shift data. J Biomol NMR. 1994 Mar;4(2):171–180. doi: 10.1007/BF00175245. [DOI] [PubMed] [Google Scholar]
- Zot A. S., Potter J. D. Structural aspects of troponin-tropomyosin regulation of skeletal muscle contraction. Annu Rev Biophys Biophys Chem. 1987;16:535–559. doi: 10.1146/annurev.bb.16.060187.002535. [DOI] [PubMed] [Google Scholar]
