Table 3.
Motifs derived by Gibbs sampling the indicated modules (see additional File 1).
| Module | recovered factors (copies) | novel motifs |
|---|---|---|
| eve stripes 2, 3+7 | kni(15), bcd(9), hb/cad(9) | |
| eve stripes 5, 4+6 | hb/cad(6), kni/hb/cad(12) | RTTNSRCGSAAT(9), ATYCYGCARY/bcd (6) |
| h stripes 5,6,7 | Kr(12), hb/cad(14) km (7) | GRCNWG[T/G]TSNSA (9) |
| hb (both mods) | Kr/tll(6), hb/cad(8) | ATTTTCCNSC (9) |
| kni (1.1 k) | Kr(7), tll(5), hb/cad(9) | GWGWG[A/C]GWGYG(7) |
| Kr (700 bp) | bcd(5), hb/cad(7) | TWNTGATCCWS (6) |
| tll (3 mods) | kni(9), cad(9), Kr(7), hb/cad(8) | TCRAWSAAT/torRE (8) |
The criterion for a motif to match a known factor is given in Methods; copies refers to all sequences in the Gibbs derived motif. Only the consensus sequences of the most prominent unclassified motifs are shown with the abbreviations (R = A/G, W = A/T, S = G/C). Matches in italics are marginal and names linked by / co-occur within the same Gibbs motif, possibly on opposite strands.