Extended Data Fig. 4. B cell compartment in mice lacking p53, Rfx7, and Myc.

a) The number and ratio of BL or DLBCL patients10,11,16,52–54 with and without TP53 alterations are shown according to RFX7 mutation status (related to Supplementary Table 3). Fisher’s exact test (two-sided); odds ratio (OR, 95% CI). b) The B cell compartment of 6–16 weeks old Cd19p53wt/wtRfx7wt/wt, Cd19p53fl/fl, Cd19p53fl/flRfx7fl/fl, and Cd19p53fl/flRfx7fl/flMycfl/fl mice was analyzed at steady state. Graphs illustrate spleen cellularity, B cell (CD19+B220+), follicular B cell (CD21−CD23+), and marginal zone B cell (CD21+CD23−) percentages. Results represent mean±s.e.m. of n = 8 Cd19p53wt/wtRfx7wt/wt, n = 7 Cd19p53fl/fl, n = 8 Cd19p53fl/flRfx7fl/fl, and n = 5 Cd19p53fl/flRfx7fl/flMycfl/fl mice and are a pool of two independent experiments. Statistical comparisons were performed using one-way ANOVA corrected for multiple testing using the Dunnett method; only significant results between Cd19p53fl/flRfx7fl/fl mice and the other groups are shown. c) Survival curves of n = 11 Cd19p53fl/fl, n = 8 Cd19p53fl/flRfx7fl/fl, n = 8 Cd19p53fl/flRfx7fl/flMycfl/wt, n = 9 Cd19p53fl/flRfx7fl/flMycfl/fl, and n = 7 Cd19p53fl/flRfx7fl/flAicda−/− mice. Mice were sacrificed at the onset of symptoms or at the end of the experiment at 300 days. Statistical comparisons between the experimental groups were performed using Mantel Cox test; only significant comparisons are shown. d) Immunoblot analysis showing the expression of Rfx7 and p53 in lysates of untreated or CpG-stimulated (18 h) B cells enriched from spleens of Cd19p53wt/wtRfx7wt/wt, Cd19Rfx7fl/fl, Cd19p53fl/fl, and Cd19p53fl/flRfx7fl/fl mice. β-actin was used as loading control and data are representative of two independent experiments. e) Heatmap of a selection of genes (Tob1, Tsc22d1, Mxd4, Ddit4, Trp53, Psrc1, and Serpine2) from RNA-seq analysis presented in Fig. 2d is shown. f) Sorted splenic FO B cells (CD19+, B220+ and CD23+) of 6 to 14-week-old mice of indicated genotypes were stimulated with CpG (18 h). Graphs show mRNA levels of Mxd4, Tob1, Tsc22d1, Ddit4, Serpine2, and Psrc1 assessed by RT-qPCR (values normalized to Hprt and 18 s; results are pool of two experiments, one control from each experiment was set to 1). Results represent mean ± s.e.m. of n = 4 Cd19Rfx7wt/wt, n = 5 Cd19Rfx7fl/fl, n = 6 Cd19p53fl/fl, and n = 6 Cd19p53fl/flRfx7fl/fl mice. Statistical comparisons were performed using two-way ANOVA corrected for multiple testing using Tukey method; only significant comparisons are shown. g) Graphs show percentage of blasting B cells of indicated genotypes, 18 h post-stimulation with CpG, and the representative flow cytometry plots thereof (results represent mean±s.e.m. of n = 3 mice/group). Statistical comparisons were performed using two-way ANOVA corrected for multiple testing using Tukey method; only significant comparisons are shown. h) The B cell compartment of 6–14 weeks old Cd19p53wt/wtRfx7wt/wt and Cd19p53fl/flRfx7fl/flAicda−/− mice was analyzed at steady state. Graphs illustrate spleen cellularity, B cell (CD19+B220+), follicular B cell (CD21−CD23+), and marginal zone B cell (CD21+CD23−) percentages. Results represent mean±s.e.m. of n = 4 Cd19p53wt/wtRfx7wt/wt and n = 3 Cd19p53fl/flRfx7fl/flAicda−/− mice. Statistical comparisons were performed using unpaired student’s t-test, two-tailed.