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. 2005 Oct 24;33(19):6114–6123. doi: 10.1093/nar/gki914

Table 2.

Estimated criteria with cross-validation

Signal threshold (%) Criteria Training NPV (%) Training C (%) Testing NPV (%) Testing C (%) N of runs with cutoffs generated
5 Identity 0
Stretch 0
Energy ≥ −12.40 95.9 31.2 93.3 30.8 10
Identity ≤ 0.81 and stretch ≤ 11 96.2 34.1 70.8 39.1 2
Identity ≤ 0.85, stretch ≤ 13 and energy ≥ −13.00 95.9 32.0 91.7 30.9 10
8 Identity ≤ 0.77 96.3 31.3 82.5 31.3 10
Stretch ≤ 11 95.2 43.9 66.7 33.3 2
Energy ≥ −20.00 95.8 48.8 91.7 55.0 10
Identity ≤ 0.81 and stretch ≤ 14 96.5 42.5 85.0 38.7 10
Identity ≤ 0.83, stretch ≤ 17 and energy ≥ −29.20 96.8 58.1 89.1 58.6 10
10 Identity ≤ 0.77 96.0 28.8 98.0 30.3 10
Stretch ≤ 11.00 95.9 43.2 96.3 44.5 10
Energy ≥ −20.10 95.9 47.9 91.7 48.6 10
Identity ≤ 0.84 and stretch ≤ 13 96.0 44.2 91.3 36.0 10
Identity ≤ 0.87, stretch ≤ 17 and energy ≥ −30.70 95.7 72.2 93.3 72.6 10

Data were partitioned into 10 subsets. Values shown are averages. Settings were the same as in Table 1.