TABLE 3.
Locations of LSPP s and their distribution across a screening panel of 96 non-M. avium subsp. paratuberculosis isolatesa
| Sequence | Start | End | Open reading frames | Presence in non-M. avium subsp. paratuberculosis isolates | Characteristic of LSPP |
|---|---|---|---|---|---|
| LSPP1 | 101,281 | 117,322 | MAP0094-0107 | 21 | |
| LSPP2 | 298,775 | 303,349 | MAP0282-0284 | 0 | Segment with low homology |
| LSPP3 | 409,982 | 413,017 | MAP0387-0389 | 4 | |
| LSPP4 | 874,118 | 889,494 | MAP0851-0866 | 0 | Additional segment |
| LSPP5 | 990,416 | 1,003,949 | MAP0957-0967 | 51 | |
| LSPP6 | 1,292,643 | 1,300,357 | MAP1231-1237 | 56 | |
| LSPP7 | 1,441,715 | 1,449,170 | MAP1344-1349 | 19 | |
| LSPP8 | 1,785,287 | 1,792,800 | MAP1631-1637 | 40 | |
| LSPP9 | 1,877,241 | 1,894,258 | MAP1718-1732 | 44 | |
| LSPP10 | 2,233,452 | 2,236,388 | MAP2027-2029 | 10 | |
| LSPP11 | 2,378,964 | 2,391,994 | MAP2148-2158 | 0 | Additional segment |
| LSPP12 | 2,422,564 | 2,442,004 | MAP2179-2196 | 0 | Replacement of a segment |
| LSPP13 | 3,081,818 | 3,099,481 | MAP2751-2768 | 8 | |
| LSPP14 | 4,144,803 | 4,209,911 | MAP3725-3764 | 0 | Additional and low-homology segments |
| LSPP15 | 4,214,731 | 4,220,156 | MAP3771-3776 | 0 | Additional and low-homology segments |
| LSPP16 | 4,261,192 | 4,267,858 | MAP3814-3818 | 0 | Additional segment |
| LSPP17 | 4,734,953 | 4,738,741 | MAP4266-4270 | 5 |
a
Start and end refer to base pairs from the first nucleotide of the start codon of dnaA on the genome of M. avium subsp. paratuberculosis strain K10. Gene names are those given to M. avium subsp. paratuberculosis strain K10 (GenBank accession number NC_002944).