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. 2005 Jun;79(12):7349–7354. doi: 10.1128/JVI.79.12.7349-7354.2005

TABLE 1.

Primers used for PCR and DNA sequence analyses

Primer 3′ base Primer sequence
SIV primersa
    239-2571 2571 CTGCACCTCAATTCTCTCTTTG
    239-2675 2675 GTAACAGGAATAGAGTTAGGTCCAC
    239-2786 2786 ATTAAAGGGACAATCATGACAG
    239-4615 (R) 4615 TCTGTCTGGCCACTATTCTG
    239-4751 (R) 4751 TCCACTAGCTACATGTACTGCAAC
HIV-1 primersb
    HXB2-2441 2441 GTAAGACAGTATGATCAGATACTC
    HXB2-2493 2493 TACAGTATTAGTAGGACCTACAC
    HXB2-EcoRV 2987 ACCAGGGATTAGATATCAGTAC
    HXB2-3145 3145 TTAGAAATAGGGCAGCATAG
    HXB2-3509 3509 CCAGTACATGGAGTGTATTATGAC
    HXB2-3837 3837 GTGAAATTATGGTACCAGTTAG
    HXB2-3039 (R) 3039 GGCTCTAAGATTTTTGTCAT
    HXB2-3253 (R) 3253 GTACTGTCCATTTATCAGGAT
    HXB2-4277 (R) 4277 AGCCATTGCTCTCCAATTACTG
    HXB2-4384 (R) 4384 CTGGACTACAGTCTACTTGTC
a

SIV primers are based on the sequence of SIVmac239 (GenBank accession number M33262). Nucleotides of SIV are numbered beginning from the 5′ end of the SIV genome (i.e., position 1 of SIV corresponds to nucleotide 257 of the M33262 sequence).

b

GenBank accession number K03455.