. 2006 Apr 10;97(5):411–419. doi: 10.1111/j.1349-7006.2006.00194.x

Table 1.

Candidate peptides derived from SCRN1 and their predicted binding affinities to HLA‐A*0201

Position ^†	Sequence ^‡ (9‐mer)	Score ^§	Position ^†	Sequence ^‡ (10‐mer)	Score ^§
303	SIFKPFIFV	369.7	308	FIFVDDVKLV	374.3
75	WLWGAEMGA	189.6	158	LIVDRDEAWV	366.6
68	IMISRPAWL	144.2	272	FLTTASGVSV	319.9
107	LLGMDLVRL	83.5	371	TMLEIEKQGL	234.0
308	FIFVDDVKL	49.9	106	ALLGMDLVRL	181.7
265	VCIDSEFFL	31.0 (N.S.)	67	AIMISRPAWL	59.7
306	KPFIFVDDV	25.1 (N.S.)	264	GVCIDSEFFL	59.6
159	IVDRDEAWV	22.7	315	KLVPKTQSPC	17.3
257	TLRDKASGV	21.6	220	FNFSEVFSPV	14.6
196	KMDAEHPEL	21.6	56	YISIDQVPRT	10.8
126	ALDVIVSLL	19.6	216	GEGEFNFSEV	10.5
207	YAQSQGWWT	19.6 (N.S.)	175	WAAEKVTEGV	8.9
367	KLRSTMLEL	13.0	281	VLPQNRSSPC	8.4
157	YLIVDRDEA	11.1	2	AAAPPSYCFV	7.9
3	AAPPSYCFV	7.9	253	TMMNTLRDKA	6.5
109	GMDLVRLGL	6.1	397	EVGDIFYDCV	5.2
179	KVTEGVRCI	6.0	79	AEMGANEHGV	5.0
266	CIDSEFFLT	4.5	20	GLVVFGKNSA	4.9
250	TVQTMMNTL	4.2	190	QLSLTTKMDA	4.9 (N.S.)
80	EMGANEHGV	3.7	302	RSIFKPFIFV	4.7

The amino acid sequences of candidate peptides are listed in the order of binding affinities to HLA‐A*0201 molecules.

^{^†}

The amino acid sequence number for position 1 in the candidate peptide, counting from the N‐terminal of SCRN1;

^{^‡}

^‡ The standard single letter amino acid code is used.

^{^§}

^§ The estimated half‐life of dissociation score for each peptide was calculated using BIMAS software. Higher scores indicate higher affinity to MHC class I molecules. N.S., not synthesized due to the high hydrophobicity of amino acid sequences.