TABLE 3.
DNA sequences for the ERK1 allelles of some of the Candida sp. strainsa
| Identification no. | No. of clones/sequenced alleles | Allele | Sequence of allele |
|---|---|---|---|
| HIV-infected patients on the daily treatment regimen | |||
| 22-2435 | 5 | 237A | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)4 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)4 |
| 2 | 246A | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)8 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)3 | |
| 2 | 234A | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)4 CAGGCAGCAGCCGCAGCCGCAGCAGCTANCGCTGCANCTACTA(CTT)3 | |
| 22-2599 | 1 | 234A | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)4 CAGGCAGCAGCCGCAGCCGCAGCAGCTANCGCTGCANCTACTA(CTT)3 |
| 1 | 246A | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)4 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)3 | |
| 29-2436 | 2 | 246C | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)8 CAGGCAGCCGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)3 |
| 1 | 237A | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)4 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)4 | |
| 29-2593 | 1 | 246C | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)8 CAGGCAGCCGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)3 |
| 62-2437 | 1 | 246A | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)8 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)3 |
| 62-2589 | 3 | CdubA | (CAGGCT)1 (CAA)2CAGGCT(CAA)2CAG(GCA)7ACAACAGCAGCTAAC(GCT)5GGTGCTA(CTT)2 |
| 80-2525 | 4 | 249E | (CAGGCT)4 (CAAGCT)1 CAAGCA(CAA)6 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)4 |
| 2 | 246A | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)8 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)3 | |
| 80-2624 | 1 | 249E | (CAGGCT)4 (CAAGCT)1 CAAGCA(CAA)6 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)4 |
| 3 | 246A | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)8 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)3 | |
| HIV-infected patients on the weekly treatment regimen | |||
| 36-2518 | 2 | 246D | (CAGGCT)3 (CAAGCT)2 CAAGCA(CAA)6 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTACAGCTACTA(CTT)3 |
| 36-2617 | 2 | 249D | (CAGGCT)3 (CAAGCT)2 CAAGCA(CAA)7 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)3 |
| 1 | 246D | (CAGGCT)3 (CAAGCT)2 CAAGCA(CAA)6 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTACAGCTACTA(CTT)3 | |
| 69-2514 | 1 | 246A | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)8 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)3 |
| 69-2608 | 2 | 246A | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)8 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)3 |
| 386-2607 | 4 | 237A | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)4 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)4 |
| 1 | 246B | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)8 CAGGCAGCAGCAGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)3 | |
| 1 | 234A | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)4 CAGGCAGCAGCCGCAGCCGCAGCAGCTANCGCTGCANCTACTA(CTT)3 | |
| 386-2691 | 2 | 237A | (CAGGCT)3 (CAAGCT)1 CAAGCA(CAA)4 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)4 |
| 667-2686 | 2 | 249C | (CAGGCT)3 (CAAGCT)2 CAAGCA(CAA)6 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)4 |
| 667-2777 | 1 | 249C | (CAGGCT)3 (CAAGCT)2 CAAGCA(CAA)6 CAGGCAGCAGCCGCAGCCGCAGCAGCTAACGCTGCAGCTACTA(CTT)4 |
a
Data presented for strains from patients 29, 80, 36, 69, and 667 are all consistent with unchanged diplotypes (see also Results and Discussion). Strains 2607 and 2435 show more than one diplotype, suggesting within-patient heterogeneity. Identification numbers are as defined in the footnote to Table 1. Underlined, boldface characters identify single nucleotide mutations.